feat: set fastq screen & kraken db shared resource paths depending on HPC

[kelly-sovacool]

Changes

Detect the HPC and use a different fastq screen config file and kraken db path depending on if it's Biowulf or FRCE. Still allow users to override these with --shared-resources flag

Tests

Biowulf

RENEE_DIR=/data/CCBR_Pipeliner/Pipelines/RENEE/renee-dev-sovacool
WORKDIR=/data/sovacoolkl/renee_test_iss-64
rm -rf $WORKDIR

module load ccbrpipeliner
$RENEE_DIR/bin/renee run \
    --input $RENEE_DIR/.tests/*.R?.fastq.gz \
    --output $WORKDIR \
    --genome hg38_30 \
    --mode slurm \
    --sif-cache /data/CCBR_Pipeliner/SIFS

FRCE

#!/bin/bash
RENEE_DIR=/mnt/projects/CCBR-Pipelines/pipelines/RENEE/renee-dev-sovacool
WORKDIR=/scratch/cluster_scratch/$USER/renee_test_iss-64
rm -rf $WORKDIR

module load singularity
$RENEE_DIR/bin/renee run \
    --input $RENEE_DIR/.tests/*.R?.fastq.gz \
    --output $WORKDIR \
    --tmp-dir $WORKDIR \
    --genome hg38_30 \
    --mode slurm \
    --sif-cache /mnt/projects/CCBR-Pipelines/SIFs

Issues

Fixes #64

PR Checklist

(~Strikethrough~ any points that are not applicable.)

• [x] This comment contains a description of changes with justifications, with any relevant issues linked.
• ~[ ] Update docs if there are any API changes.~
• [x] Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/

[kelly-sovacool]

waiting on #85 to be merged so I can test this again with those fixes incorporated

Test runs worked.

[kelly-sovacool]

@kopardev just waiting on you to review this before we can merge it.