CCBR / Tools

Utilities for CCBR Bioinformatics Software ⚒️
https://ccbr.github.io/Tools/
MIT License
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Slurm templates #7

Closed kelly-sovacool closed 2 months ago

kelly-sovacool commented 3 months ago

Changes

Add slurm submission script templates for supported HPC platforms (biowulf, frce) and workflow languages (nextflow, snakemake).

Issues

NA

PR Checklist

(~Strikethrough~ any points that are not applicable.)

codecov[bot] commented 2 months ago

Codecov Report

Attention: Patch coverage is 81.81818% with 10 lines in your changes missing coverage. Please review.

Project coverage is 35.22%. Comparing base (ffd78ee) to head (ef6b9aa). Report is 40 commits behind head on main.

Files Patch % Lines
src/ccbr_tools/pkg_util.py 58.33% 5 Missing :warning:
src/ccbr_tools/pipeline/nextflow.py 60.00% 4 Missing :warning:
src/ccbr_tools/pipeline/hpc.py 96.66% 1 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #7 +/- ## ========================================== + Coverage 32.01% 35.22% +3.20% ========================================== Files 10 13 +3 Lines 884 1042 +158 ========================================== + Hits 283 367 +84 - Misses 601 675 +74 ```

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