Version not printed "correctly" on headnode

CCBR / XAVIER

An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH

https://ccbr.github.io/XAVIER/

MIT License

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Version not printed "correctly" on headnode #71

Open kopardev opened 8 months ago

kopardev commented 8 months ago

xavier --version prints the correct version but not before complaining that singularity and snakemake are not loaded. Can singularity/snakemake be not loaded if only version needs printing??

On head node:

On interactive node:

Also, why is unloading "ccbrpipeliner" before loading snakemake/singularity modules?

kelly-sovacool commented 8 months ago

Let's discuss whether we could handle loading modules in the ccbrpipeliner module instead of inside the XAVIER and RENEE (and other pipelines) wrapper scripts: https://github.com/CCBR/RENEE/issues/107#issuecomment-1918102721

kelly-sovacool commented 8 months ago

As we discussed today @kopardev, let's let this slide for now and fix it by loading the modules in ccbrpipeliner instead of in bin/redirect