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CCBR / XAVIER

An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH
https://ccbr.github.io/XAVIER/
MIT License
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Varscan VCF rename #83

Closed dnousome closed 7 months ago

dnousome commented 8 months ago

Varscan outputs sample as Sample1 in tumor only mode. Need to reheader to correct sample name

dnousome commented 7 months ago

Bug could also affect mutect in unpaired mode where sample is ordered None,Sample or paired mode where sample is ordered in normal,tumor. Reorder in bcftools prior