refactor genome config structure to match RENEE

CCBR / XAVIER

An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH

https://ccbr.github.io/XAVIER/

MIT License

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refactor genome config structure to match RENEE #98

Closed kelly-sovacool closed 3 months ago

kelly-sovacool commented 3 months ago

In RENEE, platform-specific genome configs are in config/genomes/<hpcname>/hgXX_YY.json. We should reorganize XAVIER to follow the same format so we can reuse CLI code more easily.