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CCBR
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ccbr1271_ERVpipeline
ERV pipeline based of scripts from NCI Yasmine Belkaid Lab
https://ccbr.github.io/ccbr1271_ERVpipeline/
MIT License
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v1.0.3
#31
kopardev
closed
8 months ago
0
fix issues 28 29
#30
kopardev
closed
8 months ago
0
erv `--version` produces error
#29
kopardev
closed
8 months ago
0
mm10 related error
#28
kopardev
closed
8 months ago
0
Fix #23 and #24
#27
kopardev
closed
8 months ago
0
Multiple minor fixes
#26
kopardev
closed
8 months ago
0
update requirements.txt
#25
kopardev
closed
8 months ago
0
make hervQuant print out raw counts
#24
kopardev
closed
8 months ago
0
Raw counts from HOMER
#23
kopardev
closed
8 months ago
0
v1.0 draft
#22
kopardev
closed
9 months ago
0
feat: annotate hervquant output
#21
kopardev
closed
9 months ago
0
feat: implement hervquant
#20
kopardev
closed
9 months ago
0
feat: implement blast with DIAMOND
#19
kopardev
closed
9 months ago
0
feat: assemble reads with megahit
#18
kopardev
closed
9 months ago
0
Readme2
#17
kopardev
closed
1 year ago
0
Dev
#16
kopardev
closed
1 year ago
0
feat: add taxid info to diamond output
#15
kopardev
closed
9 months ago
2
feat: assemble with megahit
#14
kopardev
closed
1 year ago
0
feat: add diff expression
#13
kopardev
opened
1 year ago
0
feat: add annotation to HOMER output
#12
kopardev
closed
9 months ago
2
chore: create flowchart
#11
kopardev
closed
1 year ago
0
feat: analyze repeats with Sidd's code
#10
kopardev
closed
1 year ago
0
feat: analyze repeats with Sidd's code
#9
kopardev
closed
1 year ago
0
feat: locus counts matrix
#8
kopardev
closed
1 year ago
0
feat: class counts matrix
#7
kopardev
closed
1 year ago
0
feat: HOMER Locus
#6
kopardev
closed
1 year ago
0
feat: HOMER Class
#5
kopardev
closed
1 year ago
0
feat: add diamond
#4
kopardev
closed
1 year ago
0
feat: add megahit
#3
kopardev
closed
1 year ago
0
feat: add STAR strict alignment
#2
kopardev
closed
1 year ago
0
feat: add STAR loose alignment
#1
kopardev
closed
1 year ago
0