jmerkin
commented
1 year ago As an example of why it's necessary, the data in the supplement to the paper, for instance, lists in table S1 on the first line:
Initial CAR T Cell Number,motif i,motif j,motif k,motif l,motif m,Cytotoxicity (Nalm 6 Survival),(Na<95>ve + CM ) % CD62L+,Stemness (% IL7Ra+ KLRG1-) 1561,13,13,17,0,0,0.435491919,45.5,10.9
While in the notebook position_encoding_arrayed_data_12152021_CNN_LSTM-grid_search_stemness.ipynb lists:
18 | 1561 | 13 | 13 | 14 | 0 | 0 | 0.435492 | 10.90
Motif k (motif.3) is 17 in the supplement but 14 in the data used in the notebook.
Similarly, for the construct with 4446 initial counts, in the table S1, its motif numbers are
12, 9, 17, 0
And in that notebook, on the second line of the printed test data, its motif numbers are:
12, 9, 14, 0
Hello. I was wondering if the directory in one of the notebooks "saved_models" could be added to the repository