search

CCI-Bonn / HD-MS-Lesions

Automated deep learning based segmentation of multiple sclerosis lesions on MRI
Apache License 2.0
9 stars 1 forks source link

Cannot run postprocessing because the postprocessing file is missing #1

Closed woctezuma closed 1 year ago

woctezuma commented 1 year ago

There is a warning at the end of the run, similar to https://github.com/NeuroAI-HD/HD-BM/issues/1

WARNING! Cannot run postprocessing because the postprocessing file is missing.
Make sure to run consolidate_folds in the output folder of the model first!
The folder you need to run this in is /root/NeuroAI-HD/MS_Lesions/without_t1

More details below:

%cd /content
!git clone https://github.com/NeuroAI-HD/HD-MS-Lesions.git
%cd /content/HD-MS-Lesions
%pip install .
%cd ~/NeuroAI-HD/MS_Lesions
!wget https://zenodo.org/record/4915908/files/ms_lesions_weights.zip
!unzip -qq ms_lesions_weights.zip
!ms_lesions_noT1ce_predict \
 -i /content/mri_data \
 -id case \
 -o output
woctezuma commented 1 year ago

Just a warning. cf. https://github.com/NeuroAI-HD/HD-BM/issues/1#issuecomment-1446261035