issues
search
CCICB
/
vcf2mafR
Convert VCFs and VCF-related formats to MAF
Other
1
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
fix_alleles in df2maf.R
#31
sespesogil
opened
7 months ago
0
Speeeed
#30
selkamand
opened
9 months ago
0
Add options to filter for PASS variants only
#29
selkamand
opened
11 months ago
0
Support multi sample VCFS
#28
selkamand
opened
11 months ago
1
Support radia style VCFs with 3 samples
#27
selkamand
opened
11 months ago
0
fix: removed no visible binding note
#26
selkamand
closed
11 months ago
0
Remove R CMD CHECK note
#25
selkamand
closed
11 months ago
1
fix: added verbose argument to all exposed functions
#24
selkamand
closed
11 months ago
0
feat: missing_to_silent flag added to df2maf
#23
selkamand
closed
11 months ago
0
df2maf convert missing to SILENT
#22
selkamand
closed
11 months ago
0
Support Single Sample VCFs (Not just 2 sample VCFs)
#21
selkamand
opened
11 months ago
1
fix: copied df2maf description of VCF vep requirements to vcf2maf roclet
#20
selkamand
closed
11 months ago
0
fix: added example to df2maf documentation
#19
selkamand
closed
11 months ago
0
Add VCF2maf support for PAVE vcfs
#18
selkamand
opened
11 months ago
1
8 pave annotation fails df2maf
#17
selkamand
closed
11 months ago
0
fix: now supports multiple vcf_tumor_id values
#16
selkamand
closed
11 months ago
0
Support a vector of vcf_tumor_id
#15
selkamand
closed
11 months ago
0
Misleading error message when vcf_tumor_id / vcf_normal_id is not found in VCF
#14
selkamand
closed
11 months ago
1
Extrapolate auto-population of tumor_id into its own function so we can use in InterchangeGUI
#13
selkamand
closed
11 months ago
1
cut down on dependencies
#12
selkamand
opened
11 months ago
0
add example for df2maf
#11
selkamand
closed
11 months ago
0
fix: strict testing of vcf tumor ID names
#10
selkamand
closed
11 months ago
0
Verbose = FALSE should actually be quiet
#9
selkamand
closed
11 months ago
0
Pave Annotation Fails df2maf
#8
selkamand
closed
11 months ago
0
Throw error in vcfs2maf when 2 vcf files have the same tumor name
#7
selkamand
closed
11 months ago
0
feat: added vcf2df function + test files from official vcf2maf repo
#6
selkamand
closed
1 year ago
1
implement vcf2df function
#5
selkamand
opened
1 year ago
1
feat: added mutation_status column mapping and assertion on terms in …
#4
selkamand
closed
1 year ago
0
Add extra columns
#3
selkamand
opened
1 year ago
1
Add unit tests
#2
selkamand
opened
1 year ago
0
Add column: Mutation_Status
#1
selkamand
closed
1 year ago
0