[GC] The balance score value is missing in the library search job output

[aaksenov1]

The balance score value is exported from the deconvolution job output and is displayed as one of the columns. The functionality is no longer present in the transferred workflow.

[zhz125]

I am not sure I understand the problem.

[aaksenov1]

The balance score is missing, these values are supposed to be transferred from the feature table

[zhz125]

job id?

[aaksenov1]

https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=04e8c793b70548e18f76e680f1193265 This is an example, but it is the same for all library searches after moving from proteomics2 to gnps

[aaksenov1]

https://proteomics2.ucsd.edu/ProteoSAFe/status.jsp?task=23814591421b46849462340f3a34c977

[aaksenov1]

In this job balance score is displayed correctly: https://gnps.ucsd.edu/ProteoSAFe/result.jsp?task=4d50d571ecff425e925dbc9ecb98c921&view=view_all_annotations_DB&show=true So this is intermittent issue

[mwang87]

This is a test case to evaluate whether the Balance Score is being produced correctly:

https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=cadde7e9dd41452fbf0418f7116224cb

The likely culprit is in this piece of code:

https://github.com/CCMS-UCSD/GNPS_Workflows/blob/master/molecular-librarysearch-gc/tools/molecularsearch-gc/add_mshub_data.py

[mwang87]

Fixed, to evaluate, I have rerun the two test cases to see if it works:

https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=cadde7e9dd41452fbf0418f7116224cb https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=ade8843e1846447b8df522474787f9e0

@aaksenov1 Can you follow this progress?

[mwang87]

@aaksenov1 Any progress on testing?

[aaksenov1]

We re-ran all of the cdf jobs and all of them have balance score displayed correctly, so looking good.

[mwang87]

Thanks, closing issue.