[mmvec] Complete Example Input for mmvec

CCMS-UCSD / GNPS_Workflows

Public Workflows at GNPS

https://gnps.ucsd.edu/

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[mmvec] Complete Example Input for mmvec #262

Open mwang87 opened 5 years ago

mwang87 commented 5 years ago

[ ] GNPS FBMN Networking Job
[ ] qza for microbiome
[ ] taxa annotation table
[ ] Known associations between microbiome and metabolome

mwang87 commented 5 years ago

Few Old Examples

1 - Incorrect inputs for Metabolite metadata. This needs to be library identifications @aaksenov1 2 - Incorrect inputs for Metabolite metadata. This needs to be library identifications @aaksenov1 3 - Shown to be working

kcweldon20 commented 5 years ago

Currently Testing the workflow on GNPS Link to two failed jobs here (First with using a .biom table for 16S data and second with .qza from 16S) https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=0180bf461ea34d82a3946defa6bbd782 https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=a952ebcf354f49bb9a1f21e067d3d6b4

mwang87 commented 5 years ago

Cloned @kcweldon20 tests to newest version, we will try to figure out whats going on with them:

4 5 6 - Check column headers for taxa 7 - Extract taxa from qza