search

CCMS-UCSD / GNPS_Workflows

Public Workflows at GNPS
https://gnps.ucsd.edu/
Other
56 stars 44 forks source link

Table (FeatureQuant) from GNPS FBMN with OpenMS misses info #824

Closed eeko-kon closed 2 years ago

eeko-kon commented 2 years ago

Describe the bug For each feature, all groups have zero intensities. It looks as if no features were detected in any of the files, even though there is a feature list of course.

To Reproduce https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=30964ed8f6504e1cb980910a6777f620

Expected behavior There has to be intensities assigned for visualization

Additional context Attached csv exported table from cytoscape: Untitled.csv.zip

mwang87 commented 2 years ago

You need to run the latest version on proteomics2. GNPS hasn't be updated with those fixes yet.

eeko-kon commented 2 years ago

Ok, I thought with "Clone to latest version" it would be fine. My bad!

eeko-kon commented 2 years ago

Found the problem - filename related. Thanks a lot!