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'str' object has no attribute 'tag' 'NoneType' object is not subscriptable #850

Open LauraGomez96 opened 2 years ago

LauraGomez96 commented 2 years ago

Describe the bug I have problems in the data processing. When I try with mzML files I get the error: '''str' object has no attribute 'tag'''. When I try with mzxML files I get the error: '''NoneType' object is not subscriptable''. Then according to what I found in the forum also tryed with CDF files but I get the error: 'numpy.float64' object has no attribute 'split'

To Reproduce Steps/Task to reproduce the behavior:

  1. Go to: Data Processing - Deconvolution
  2. Click on: Process Raw GC-MS data
  3. Then I am able to submit the files. However, with all the formats I keep having an error making impossible to continue with the analysis.
  4. See error

Expected behavior I would like to obtain the analysis of my chromatograms.

Screenshots

Screenshot 2022-08-26 at 10 46 34 AM Screenshot 2022-08-26 at 10 47 02 AM Screenshot 2022-08-26 at 10 56 54 AM

Additional context Add any other context about the problem here.

mwang87 commented 2 years ago

I think whats happening is your mzXML has empty scans (scans with no peaks) which the software does not like.

LauraGomez96 commented 2 years ago

it cannot be, because when I open the same files on OpenChrom I can see the peacks.