FUSION CATCHER persistent error

Problem:

Xinyu is getting a persistent error with a subset of samples related to rule FUSION CATCHER

Example log info:

cat /data/khanlab2/processed_DATA/ngs_pipeline_SJ031111=SJEPD031111_D1=20220911_20221116_151637.log | grep "FUSION_CATCHER"

/data/khanlab2/processed_DATA/log/FUSION_CATCHER.52717158.e

Relevant error code:

Total count mate reads = 382926325
Read length = 126
Writing the statistics... /lscratch/52717158/log_overlaps_fr_0.txt
Count overlapping pair-reads = 263979605 [68.937%]
Count wasted nucleotides = 21235468031 [31.922%]
Most common fragment size = 167 [2702620 counts]
Starting...
No changes are done!
Done.
Converting...
Auto-detect found SANGER FASTQ format!
The end.
tr: write error: Disk quota exceeded
tr: write error
sort: write failed: standard output: Broken pipe
sort: write error
sort: write failed: standard output: Broken pipe
sort: write error

Solution:

Rule is using /lscratch/ space is is current set to --gres=lscratch:600. Increasing the requirement to --gres=lscratch:800 and will redploy.

CCRGeneticsBranch / khanlab_ngs_pipeline

FUSION CATCHER persistent error #15