search

CCRGeneticsBranch / khanlab_ngs_pipeline

0 stars 1 forks source link

Attribute error #44

Closed vinegang closed 1 year ago

vinegang commented 1 year ago

Xinyu has several samples with the follwoing error.

SJRHB030348/SJRHB030348_D1    ngs_pipeline_SJRHB030348=SJRHB030348_D1=20230318 /data/khanlab/projects/processed_DATA/ngs_pipeline_SJRHB030348=SJRHB030348_D1=20230318_20230318_010032.log AttributeError in line 78 of /data/Clinomics/Tools/ngs_pipeline_4.3/ngs_pipeline.rules:>>SJRHB031320/SJRHB031320_D1    ngs_pipeline_SJRHB031320=SJRHB031320_D1=20230318 /data/khanlab/projects/processed_DATA/ngs_pipeline_SJRHB031320=SJRHB031320_D1=20230318_20230318_010035.log AttributeError in line 78 of /data/Clinomics/Tools/ngs_pipeline_4.3/ngs_pipeline.rules:

vinegang commented 1 year ago

This error is caused due to incomplete json file. If this error occurs, please check the inputs

{ "subject": {}, "library": [], "sample_references": {}, "sample_type": [], "sample_captures": {}, "sample_RNASeq": {}, "RNASeq": {}, "Diagnosis": {} }