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CDAT / cdat.github.io

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https://cdat.llnl.gov
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Update streamlines tutorial for evenly spaced streamlines. #138

Closed danlipsa closed 7 years ago

danlipsa commented 7 years ago

@doutriaux1 @aashish24 Please review (and install) the new streamline tutorial.

danlipsa commented 7 years ago

@doutriaux1 Ping. Also note that the nightly nox packages from yesterday did not seem to have the new VTK or vcs.

doutriaux1 commented 7 years ago

@danlipsa vtk should beon nightlies see: https://anaconda.org/uvcdat/vtk-cdat/files

I think the travis fix to upload vcs are in: https://github.com/UV-CDAT/vcs/pull/200

danlipsa commented 7 years ago

@doutriaux1 What am I doing wrong? Note this is not the correct VTK or vcs.

[~/bugs/uvcdat/subplot]$ d=`date +%Y%m%d`
[~/bugs/uvcdat/subplot]$ conda create -n nigtly-nox-${d} -c conda-forge -c uvcdat/label/nightly -c uvcdat uvcdat-nox
Fetching package metadata .................
Solving package specifications: .
Warning: 2 possible package resolutions (only showing differing packages):
  - conda-forge::bleach-1.5.0-py27_0, conda-forge::html5lib-0.999-py27_0
  - bioconda::bleach-1.4.2-py27_0, conda-forge::html5lib-0.999999999-py27_0

Package plan for installation in environment /home/danlipsa/anaconda2/envs/nigtly-nox-20170623:

The following NEW packages will be INSTALLED:

    alabaster:                          0.7.10-py27_0      conda-forge
    asciidata:                          2.10-np112py27_0   uvcdat     
    asn1crypto:                         0.22.0-py27_0      conda-forge
    astroid:                            1.4.8-py27_0       conda-forge
    autopep8:                           1.3.1-py27_2       conda-forge
    babel:                              2.3.4-py27_0       conda-forge
    backports.functools_lru_cache:      1.3-py27_0         conda-forge
    backports.shutil_get_terminal_size: 1.0.0-py27_1       conda-forge
    backports_abc:                      0.5-py27_0         conda-forge
    basemap:                            1.1.0-np112py27_1  conda-forge
    binaryio:                           2.10-np112py27_0   uvcdat     
    bleach:                             1.5.0-py27_0       conda-forge
    bzip2:                              1.0.6-1            conda-forge
    ca-certificates:                    2017.4.17-0        conda-forge
    cdat_info:                          2.10-py27_3        conda-forge
    cdms2:                              2.10-np112py27_3   conda-forge
    cdtime:                             2.10-np112py27_0   conda-forge
    cdutil:                             2.10-py27_0        conda-forge
    certifi:                            2017.4.17-py27_0   conda-forge
    cffi:                               1.10.0-py27_0      conda-forge
    chardet:                            3.0.2-py27_1       conda-forge
    clapack:                            3.2.1-0            conda-forge
    cloog:                              0.18.0-0           defaults   
    configparser:                       3.5.0-py27_0       conda-forge
    cryptography:                       1.8.1-py27_0       defaults   
    cssgrid:                            2.10-np112py27_0   uvcdat     
    curl:                               7.52.1-0           conda-forge
    cycler:                             0.10.0-py27_0      conda-forge
    dbus:                               1.10.10-3          conda-forge
    decorator:                          4.0.11-py27_0      conda-forge
    distarray:                          2.10-py27_0        conda-forge
    docutils:                           0.13.1-py27_0      conda-forge
    dsgrid:                             2.10-np112py27_0   uvcdat     
    dv3d-nox:                           2.10-py27_0        uvcdat     
    entrypoints:                        0.2.3-py27_1       conda-forge
    enum34:                             1.1.6-py27_1       conda-forge
    eofs:                               1.2.0-py27_0       conda-forge
    esmf:                               7.0.0-6            conda-forge
    esmpy:                              7.0.0-py27_1       conda-forge
    expat:                              2.1.0-2            conda-forge
    ffmpeg:                             3.2.4-1            conda-forge
    flake8:                             3.3.0-py27_0       conda-forge
    fontconfig:                         2.12.1-4           conda-forge
    freetype:                           2.7-1              conda-forge
    functools32:                        3.2.3.2-py27_1     conda-forge
    g2clib:                             1.6.0-3            conda-forge
    gcc:                                4.8.5-7            defaults   
    genutil:                            2.10-np112py27_0   conda-forge
    geos:                               3.5.1-1            conda-forge
    gettext:                            0.19.7-1           conda-forge
    glib:                               2.51.4-0           conda-forge
    gmp:                                6.1.2-0            conda-forge
    gst-plugins-base:                   1.8.0-0            conda-forge
    gstreamer:                          1.8.0-2            conda-forge
    hdf4:                               4.2.12-0           conda-forge
    hdf5:                               1.8.17-11          conda-forge
    hdf5tools:                          2.10-np112py27_0   uvcdat     
    html5lib:                           0.999-py27_0       conda-forge
    icu:                                58.1-1             conda-forge
    idna:                               2.5-py27_0         conda-forge
    imagesize:                          0.7.1-py27_0       conda-forge
    ipaddress:                          1.0.18-py27_0      conda-forge
    ipykernel:                          4.6.1-py27_0       conda-forge
    ipython:                            5.4.1-py27_0       conda-forge
    ipython_genutils:                   0.2.0-py27_0       conda-forge
    ipywidgets:                         6.0.0-py27_0       conda-forge
    isl:                                0.12.2-0           defaults   
    isort:                              4.2.9-py27_0       conda-forge
    jasper:                             1.900.1-4          conda-forge
    jedi:                               0.10.0-py27_0      conda-forge
    jinja2:                             2.9.5-py27_0       conda-forge
    jpeg:                               9b-0               conda-forge
    jsonschema:                         2.5.1-py27_0       conda-forge
    jupyter:                            1.0.0-py27_0       conda-forge
    jupyter_client:                     5.0.1-py27_0       conda-forge
    jupyter_console:                    5.1.0-py27_0       conda-forge
    jupyter_core:                       4.3.0-py27_0       conda-forge
    lapack:                             3.6.1-1            conda-forge
    lazy-object-proxy:                  1.3.0-py27_0       conda-forge
    libcdms:                            2.10-2             conda-forge
    libcf:                              1.0-py27_0         conda-forge
    libdrs:                             2.10-1             conda-forge
    libdrs_f:                           2.10-py27_0        conda-forge
    libffi:                             3.2.1-3            conda-forge
    libgcc:                             5.2.0-0            defaults   
    libgfortran:                        3.0.0-1            defaults   
    libiconv:                           1.14-4             conda-forge
    libnetcdf:                          4.4.1.1-4          conda-forge
    libpng:                             1.6.28-0           conda-forge
    libsodium:                          1.0.10-0           conda-forge
    libtiff:                            4.0.6-7            conda-forge
    libxcb:                             1.12-1             conda-forge
    libxml2:                            2.9.4-4            conda-forge
    lmoments:                           2.10-np112py27_0   uvcdat     
    markupsafe:                         1.0-py27_0         conda-forge
    matplotlib:                         2.0.2-np112py27_0  conda-forge
    mccabe:                             0.6.1-py27_0       conda-forge
    mesalib:                            17.0.3-1           conda-forge
    mistune:                            0.7.4-py27_0       conda-forge
    mkl:                                2017.0.1-0         defaults   
    mpc:                                1.0.3-4            conda-forge
    mpfr:                               3.1.5-0            conda-forge
    mpich:                              3.2-4              conda-forge
    natgrid:                            2.10-np112py27_0   uvcdat     
    nb_conda:                           2.2.0-py27_0       conda-forge
    nb_conda_kernels:                   2.1.0-py27_0       conda-forge
    nbconvert:                          5.2.1-py27_1       conda-forge
    nbformat:                           4.3.0-py27_0       conda-forge
    ncurses:                            5.9-10             conda-forge
    netcdf-fortran:                     4.4.4-3            conda-forge
    notebook:                           5.0.0-py27_0       conda-forge
    numpy:                              1.12.1-py27_0      defaults   
    numpydoc:                           0.7.0-py27_0       conda-forge
    openssl:                            1.0.2k-0           conda-forge
    ort:                                2.10-np112py27_0   uvcdat     
    ossuuid:                            1.6.2-0            conda-forge
    output_viewer:                      1.2.2-py27_0       uvcdat     
    packaging:                          16.8-py27_0        conda-forge
    pandoc:                             1.19.2-0           conda-forge
    pandocfilters:                      1.4.1-py27_0       conda-forge
    pathlib2:                           2.3.0-py27_0       conda-forge
    pcre:                               8.39-0             conda-forge
    pep8:                               1.7.0-py27_0       conda-forge
    pexpect:                            4.2.1-py27_0       conda-forge
    pickleshare:                        0.7.3-py27_0       conda-forge
    pip:                                9.0.1-py27_0       conda-forge
    proj4:                              4.9.3-4            conda-forge
    prompt_toolkit:                     1.0.14-py27_0      conda-forge
    psutil:                             5.2.1-py27_0       conda-forge
    pthread-stubs:                      0.3-1              conda-forge
    ptyprocess:                         0.5.2-py27_0       conda-forge
    pycodestyle:                        2.3.1-py27_0       conda-forge
    pycparser:                          2.17-py27_0        conda-forge
    pyflakes:                           1.5.0-py27_0       conda-forge
    pygments:                           2.2.0-py27_0       conda-forge
    pylint:                             1.6.5-py27_0       conda-forge
    pyopenssl:                          16.2.0-py27_0      conda-forge
    pyparsing:                          2.2.0-py27_0       conda-forge
    pyproj:                             1.9.5.1-py27_0     conda-forge
    pyqt:                               5.6.0-py27_4       conda-forge
    pyshp:                              1.2.11-py27_0      conda-forge
    pysocks:                            1.6.7-py27_0       conda-forge
    python:                             2.7.13-1           conda-forge
    python-dateutil:                    2.6.0-py27_0       conda-forge
    pytz:                               2017.2-py27_0      conda-forge
    pyzmq:                              16.0.2-py27_2      conda-forge
    qt:                                 5.6.2-3            conda-forge
    qtawesome:                          0.4.4-py27_0       conda-forge
    qtconsole:                          4.3.0-py27_0       conda-forge
    qtpy:                               1.2.1-py27_0       conda-forge
    readline:                           6.2-0              conda-forge
    regridpack:                         2.10-np112py27_0   uvcdat     
    requests:                           2.18.1-py27_0      conda-forge
    rope:                               0.10.5-py27_0      conda-forge
    scandir:                            1.5-py27_1         conda-forge
    scipy:                              0.19.0-np112py27_0 defaults   
    setuptools:                         33.1.1-py27_0      conda-forge
    shgrid:                             2.10-np112py27_0   uvcdat     
    simplegeneric:                      0.8.1-py27_0       conda-forge
    singledispatch:                     3.4.0.3-py27_0     conda-forge
    sip:                                4.18-py27_1        conda-forge
    six:                                1.10.0-py27_1      conda-forge
    snowballstemmer:                    1.2.1-py27_0       conda-forge
    sphinx:                             1.6.2-py27_0       conda-forge
    sphinxcontrib-websupport:           1.0.1-py27_0       conda-forge
    spyder:                             3.1.4-py27_0       conda-forge
    sqlite:                             3.13.0-1           conda-forge
    ssl_match_hostname:                 3.5.0.1-py27_1     conda-forge
    subprocess32:                       3.2.7-py27_0       conda-forge
    terminado:                          0.6-py27_0         conda-forge
    testpath:                           0.3-py27_0         conda-forge
    thermo-nox:                         2.10-py27_0        uvcdat     
    tk:                                 8.5.19-1           conda-forge
    tornado:                            4.5.1-py27_0       conda-forge
    traitlets:                          4.3.2-py27_0       conda-forge
    trends:                             2.10-np112py27_0   uvcdat     
    typing:                             3.6.1-py27_0       conda-forge
    udunits2:                           2.2.23-0           conda-forge
    urllib3:                            1.21.1-py27_1      conda-forge
    uvcdat-nox:                         2.10-2             uvcdat     
    uvcmetrics-nox:                     2.2-np112py27_0    uvcdat     
    vcs-nox:                            2.10-2             uvcdat     
    vcsaddons-nox:                      2.10-py27_0        uvcdat     
    vtk-cdat-nox:                       7.1.0.2.10-py27_0  uvcdat     
    wcwidth:                            0.1.7-py27_0       conda-forge
    webencodings:                       0.5-py27_0         conda-forge
    wheel:                              0.29.0-py27_0      conda-forge
    widgetsnbextension:                 2.0.0-py27_0       conda-forge
    wk-nox:                             2.10-py27_0        uvcdat     
    wrapt:                              1.10.8-py27_0      conda-forge
    x264:                               20131217-3         conda-forge
    xmgrace:                            2.10-py27_0        uvcdat     
    xorg-libxau:                        1.0.8-3            conda-forge
    xorg-libxdmcp:                      1.1.2-3            conda-forge
    xz:                                 5.2.2-0            conda-forge
    zeromq:                             4.2.1-1            conda-forge
    zlib:                               1.2.11-0           conda-forge
    zonalmeans:                         2.10-np112py27_0   uvcdat     
libsodium-1.0. 100% |####################################################################################################################################################################| Time: 0:00:00   6.00 MB/s
proj4-4.9.3-4. 100% |####################################################################################################################################################################| Time: 0:00:00  10.39 MB/s
configparser-3 100% |####################################################################################################################################################################| Time: 0:00:00   2.42 MB/s
mistune-0.7.4- 100% |####################################################################################################################################################################| Time: 0:00:00   2.02 MB/s
pandocfilters- 100% |####################################################################################################################################################################| Time: 0:00:00   8.28 MB/s
ptyprocess-0.5 100% |####################################################################################################################################################################| Time: 0:00:00  13.89 MB/s
html5lib-0.999 100% |####################################################################################################################################################################| Time: 0:00:00   1.64 MB/s
jupyter_core-4 100% |####################################################################################################################################################################| Time: 0:00:00   2.30 MB/s
jupyter_client 100% |####################################################################################################################################################################| Time: 0:00:00   2.18 MB/s
nbformat-4.3.0 100% |####################################################################################################################################################################| Time: 0:00:00   3.62 MB/s
terminado-0.6- 100% |####################################################################################################################################################################| Time: 0:00:00  20.86 MB/s
ipykernel-4.6. 100% |####################################################################################################################################################################| Time: 0:00:00   4.82 MB/s
jupyter_consol 100% |####################################################################################################################################################################| Time: 0:00:00  12.86 MB/s
notebook-5.0.0 100% |####################################################################################################################################################################| Time: 0:00:01   3.06 MB/s
qtconsole-4.3. 100% |####################################################################################################################################################################| Time: 0:00:00  25.01 MB/s
widgetsnbexten 100% |####################################################################################################################################################################| Time: 0:00:00  12.37 MB/s
ipywidgets-6.0 100% |####################################################################################################################################################################| Time: 0:00:00   1.02 MB/s
+ /home/danlipsa/anaconda2/envs/nigtly-nox-20170623/bin/python -m nb_conda_kernels.install --enable --prefix=/home/danlipsa/anaconda2/envs/nigtly-nox-20170623
Enabling nb_conda_kernels...
Enabled nb_conda_kernels

+ /home/danlipsa/anaconda2/envs/nigtly-nox-20170623/bin/jupyter-nbextension enable nb_conda --py --sys-prefix
Enabling notebook extension nb_conda/main...
      - Validating: OK
Enabling tree extension nb_conda/tree...
      - Validating: OK
+ /home/danlipsa/anaconda2/envs/nigtly-nox-20170623/bin/jupyter-serverextension enable nb_conda --py --sys-prefix
Enabling: nb_conda
- Writing config: /home/danlipsa/anaconda2/envs/nigtly-nox-20170623/etc/jupyter
    - Validating...
      nb_conda  OK

#
# To activate this environment, use:
# > source activate nigtly-nox-20170623
#
# To deactivate this environment, use:
# > source deactivate nigtly-nox-20170623
#

[~/bugs/uvcdat/subplot]$ source activate nigtly-nox-20170623
(nigtly-nox-20170623) [~/bugs/uvcdat/subplot]$ python
Python 2.7.13 | packaged by conda-forge | (default, May  2 2017, 12:48:11) 
[GCC 4.8.2 20140120 (Red Hat 4.8.2-15)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import vcs
>>> import cdms2
>>> quit()
(nigtly-nox-20170623) [~/bugs/uvcdat/subplot]$ conda list | grep vtk-cdat
vtk-cdat-nox              7.1.0.2.10               py27_0    uvcdat
doutriaux1 commented 7 years ago

@danlipsa you need to put uvcdat/label/nightly before conda-forge channel

dnadeau4 commented 7 years ago

@danlipsa Charles is right! 👍

danlipsa commented 7 years ago

@doutriaux1 @dnadeau4 Still no luck. It seems cdms is picked up from nightly, but nothing else.

[~/bugs/uvcdat/subplot]$ d=`date +%Y%m%d`
[~/bugs/uvcdat/subplot]$ conda create -n nigtly-nox-${d} -c uvcdat/label/nightly -c conda-forge -c uvcdat uvcdat-nox
Fetching package metadata .................
Solving package specifications: .
Warning: 2 possible package resolutions (only showing differing packages):
  - bioconda::bleach-1.4.2-py27_0, conda-forge::html5lib-0.999999999-py27_0
  - conda-forge::bleach-1.5.0-py27_0, conda-forge::html5lib-0.999-py27_0

Package plan for installation in environment /home/danlipsa/anaconda2/envs/nigtly-nox-20170626:

The following NEW packages will be INSTALLED:

    alabaster:                          0.7.10-py27_0          conda-forge         
    asciidata:                          2.10-np112py27_0       uvcdat              
    asn1crypto:                         0.22.0-py27_0          conda-forge         
    astroid:                            1.5.3-py27_0           conda-forge         
    autopep8:                           1.3.2-py27_0           conda-forge         
    babel:                              2.3.4-py27_0           conda-forge         
    backports.functools_lru_cache:      1.3-py27_0             conda-forge         
    backports.shutil_get_terminal_size: 1.0.0-py27_1           conda-forge         
    backports_abc:                      0.5-py27_0             conda-forge         
    basemap:                            1.1.0-np112py27_1      conda-forge         
    binaryio:                           2.10-np112py27_0       uvcdat              
    bleach:                             1.4.2-py27_0           bioconda            
    bzip2:                              1.0.6-1                conda-forge         
    ca-certificates:                    2017.4.17-0            conda-forge         
    cdat_info:                          2.10-py27_3            conda-forge         
    cdms2:                              2017.06.06-np112py27_0 uvcdat/label/nightly
    cdtime:                             2.10-np112py27_0       conda-forge         
    cdutil:                             2.10-py27_0            conda-forge         
    certifi:                            2017.4.17-py27_0       conda-forge         
    cffi:                               1.10.0-py27_0          conda-forge         
    chardet:                            3.0.2-py27_1           conda-forge         
    clapack:                            3.2.1-0                conda-forge         
    cloog:                              0.18.0-0               defaults            
    configparser:                       3.5.0-py27_0           conda-forge         
    cryptography:                       1.9-py27_0             conda-forge         
    cssgrid:                            2.10-np112py27_0       uvcdat              
    curl:                               7.52.1-0               conda-forge         
    cycler:                             0.10.0-py27_0          conda-forge         
    dbus:                               1.10.10-3              conda-forge         
    decorator:                          4.0.11-py27_0          conda-forge         
    distarray:                          2.10-py27_0            conda-forge         
    docutils:                           0.13.1-py27_0          conda-forge         
    dsgrid:                             2.10-np112py27_0       uvcdat              
    dv3d-nox:                           2.10-py27_0            uvcdat              
    entrypoints:                        0.2.3-py27_1           conda-forge         
    enum34:                             1.1.6-py27_1           conda-forge         
    eofs:                               1.2.0-py27_0           conda-forge         
    esmf:                               7.0.0-6                conda-forge         
    esmpy:                              7.0.0-py27_1           conda-forge         
    expat:                              2.1.0-2                conda-forge         
    ffmpeg:                             3.2.4-1                conda-forge         
    flake8:                             3.3.0-py27_0           conda-forge         
    fontconfig:                         2.12.1-4               conda-forge         
    freetype:                           2.7-1                  conda-forge         
    functools32:                        3.2.3.2-py27_1         conda-forge         
    g2clib:                             1.6.0-3                conda-forge         
    gcc:                                4.8.5-7                defaults            
    genutil:                            2.10-np112py27_0       conda-forge         
    geos:                               3.5.1-1                conda-forge         
    gettext:                            0.19.7-1               conda-forge         
    glib:                               2.51.4-0               conda-forge         
    gmp:                                6.1.2-0                conda-forge         
    gst-plugins-base:                   1.8.0-0                conda-forge         
    gstreamer:                          1.8.0-2                conda-forge         
    hdf4:                               4.2.12-0               conda-forge         
    hdf5:                               1.8.17-11              conda-forge         
    hdf5tools:                          2.10-np112py27_0       uvcdat              
    html5lib:                           0.999999999-py27_0     conda-forge         
    icu:                                58.1-1                 conda-forge         
    idna:                               2.5-py27_0             conda-forge         
    imagesize:                          0.7.1-py27_0           conda-forge         
    ipaddress:                          1.0.18-py27_0          conda-forge         
    ipykernel:                          4.6.1-py27_0           conda-forge         
    ipython:                            5.4.1-py27_0           conda-forge         
    ipython_genutils:                   0.2.0-py27_0           conda-forge         
    ipywidgets:                         6.0.0-py27_0           conda-forge         
    isl:                                0.12.2-0               defaults            
    isort:                              4.2.9-py27_0           conda-forge         
    jasper:                             1.900.1-4              conda-forge         
    jedi:                               0.10.0-py27_0          conda-forge         
    jinja2:                             2.9.5-py27_0           conda-forge         
    jpeg:                               9b-0                   conda-forge         
    jsonschema:                         2.5.1-py27_0           conda-forge         
    jupyter:                            1.0.0-py27_0           conda-forge         
    jupyter_client:                     5.1.0-py27_0           conda-forge         
    jupyter_console:                    5.1.0-py27_0           conda-forge         
    jupyter_core:                       4.3.0-py27_0           conda-forge         
    lapack:                             3.6.1-1                conda-forge         
    lazy-object-proxy:                  1.3.0-py27_0           conda-forge         
    libcdms:                            2.10-2                 conda-forge         
    libcf:                              1.0-py27_0             conda-forge         
    libdrs:                             2.10-1                 conda-forge         
    libdrs_f:                           2.10-py27_0            conda-forge         
    libffi:                             3.2.1-3                conda-forge         
    libgcc:                             5.2.0-0                defaults            
    libgfortran:                        3.0.0-1                defaults            
    libiconv:                           1.14-4                 conda-forge         
    libnetcdf:                          4.4.1.1-4              conda-forge         
    libpng:                             1.6.28-0               conda-forge         
    libsodium:                          1.0.10-0               conda-forge         
    libtiff:                            4.0.6-7                conda-forge         
    libxcb:                             1.12-1                 conda-forge         
    libxml2:                            2.9.4-4                conda-forge         
    lmoments:                           2.10-np112py27_0       uvcdat              
    markupsafe:                         1.0-py27_0             conda-forge         
    matplotlib:                         2.0.2-np112py27_0      conda-forge         
    mccabe:                             0.6.1-py27_0           conda-forge         
    mesalib:                            17.0.3-1               conda-forge         
    mistune:                            0.7.4-py27_0           conda-forge         
    mkl:                                2017.0.1-0             defaults            
    mpc:                                1.0.3-4                conda-forge         
    mpfr:                               3.1.5-0                conda-forge         
    mpich:                              3.2-4                  conda-forge         
    natgrid:                            2.10-np112py27_0       uvcdat              
    nb_conda:                           2.2.0-py27_0           conda-forge         
    nb_conda_kernels:                   2.1.0-py27_0           conda-forge         
    nbconvert:                          5.2.1-py27_1           conda-forge         
    nbformat:                           4.3.0-py27_0           conda-forge         
    ncurses:                            5.9-10                 conda-forge         
    netcdf-fortran:                     4.4.4-3                conda-forge         
    notebook:                           5.0.0-py27_0           conda-forge         
    numpy:                              1.12.1-py27_0          defaults            
    numpydoc:                           0.7.0-py27_0           conda-forge         
    openssl:                            1.0.2k-0               conda-forge         
    ort:                                2.10-np112py27_0       uvcdat              
    ossuuid:                            1.6.2-0                conda-forge         
    output_viewer:                      1.2.2-py27_0           uvcdat              
    pandoc:                             1.19.2-0               conda-forge         
    pandocfilters:                      1.4.1-py27_0           conda-forge         
    pathlib2:                           2.3.0-py27_0           conda-forge         
    pcre:                               8.39-0                 conda-forge         
    pep8:                               1.7.0-py27_0           conda-forge         
    pexpect:                            4.2.1-py27_0           conda-forge         
    pickleshare:                        0.7.3-py27_0           conda-forge         
    pip:                                9.0.1-py27_0           conda-forge         
    proj4:                              4.9.3-4                conda-forge         
    prompt_toolkit:                     1.0.14-py27_0          conda-forge         
    psutil:                             5.2.1-py27_0           conda-forge         
    pthread-stubs:                      0.3-1                  conda-forge         
    ptyprocess:                         0.5.2-py27_0           conda-forge         
    pycodestyle:                        2.3.1-py27_0           conda-forge         
    pycparser:                          2.17-py27_0            conda-forge         
    pyflakes:                           1.5.0-py27_0           conda-forge         
    pygments:                           2.2.0-py27_0           conda-forge         
    pylint:                             1.7.1-py27_0           conda-forge         
    pyopenssl:                          16.2.0-py27_0          conda-forge         
    pyparsing:                          2.2.0-py27_0           conda-forge         
    pyproj:                             1.9.5.1-py27_0         conda-forge         
    pyqt:                               5.6.0-py27_4           conda-forge         
    pyshp:                              1.2.11-py27_0          conda-forge         
    pysocks:                            1.6.7-py27_0           conda-forge         
    python:                             2.7.13-1               conda-forge         
    python-dateutil:                    2.6.0-py27_0           conda-forge         
    pytz:                               2017.2-py27_0          conda-forge         
    pyzmq:                              16.0.2-py27_2          conda-forge         
    qt:                                 5.6.2-3                conda-forge         
    qtawesome:                          0.4.4-py27_0           conda-forge         
    qtconsole:                          4.3.0-py27_0           conda-forge         
    qtpy:                               1.2.1-py27_0           conda-forge         
    readline:                           6.2-0                  conda-forge         
    regridpack:                         2.10-np112py27_0       uvcdat              
    requests:                           2.18.1-py27_0          conda-forge         
    rope:                               0.10.5-py27_0          conda-forge         
    scandir:                            1.5-py27_1             conda-forge         
    scipy:                              0.19.0-np112py27_0     defaults            
    setuptools:                         33.1.1-py27_0          conda-forge         
    shgrid:                             2.10-np112py27_0       uvcdat              
    simplegeneric:                      0.8.1-py27_0           conda-forge         
    singledispatch:                     3.4.0.3-py27_0         conda-forge         
    sip:                                4.18-py27_1            conda-forge         
    six:                                1.10.0-py27_1          conda-forge         
    snowballstemmer:                    1.2.1-py27_0           conda-forge         
    sphinx:                             1.6.2-py27_0           conda-forge         
    sphinxcontrib-websupport:           1.0.1-py27_0           conda-forge         
    spyder:                             3.1.4-py27_0           conda-forge         
    sqlite:                             3.13.0-1               conda-forge         
    ssl_match_hostname:                 3.5.0.1-py27_1         conda-forge         
    subprocess32:                       3.2.7-py27_0           conda-forge         
    terminado:                          0.6-py27_0             conda-forge         
    testpath:                           0.3-py27_0             conda-forge         
    thermo-nox:                         2.10-py27_0            uvcdat              
    tk:                                 8.5.19-1               conda-forge         
    tornado:                            4.5.1-py27_0           conda-forge         
    traitlets:                          4.3.2-py27_0           conda-forge         
    trends:                             2.10-np112py27_0       uvcdat              
    typing:                             3.6.1-py27_0           conda-forge         
    udunits2:                           2.2.23-0               conda-forge         
    urllib3:                            1.21.1-py27_1          conda-forge         
    uvcdat-nox:                         2.10-2                 uvcdat              
    uvcmetrics-nox:                     2.2-np112py27_0        uvcdat              
    vcs-nox:                            2.10-2                 uvcdat              
    vcsaddons-nox:                      2.10-py27_0            uvcdat              
    vtk-cdat-nox:                       7.1.0.2.10-py27_0      uvcdat              
    wcwidth:                            0.1.7-py27_0           conda-forge         
    webencodings:                       0.5-py27_0             conda-forge         
    wheel:                              0.29.0-py27_0          conda-forge         
    widgetsnbextension:                 2.0.0-py27_0           conda-forge         
    wk-nox:                             2.10-py27_0            uvcdat              
    wrapt:                              1.10.8-py27_0          conda-forge         
    x264:                               20131217-3             conda-forge         
    xmgrace:                            2.10-py27_0            uvcdat              
    xorg-libxau:                        1.0.8-3                conda-forge         
    xorg-libxdmcp:                      1.1.2-3                conda-forge         
    xz:                                 5.2.2-0                conda-forge         
    zeromq:                             4.2.1-1                conda-forge         
    zlib:                               1.2.11-0               conda-forge         
    zonalmeans:                         2.10-np112py27_0       uvcdat              

Proceed ([y]/n)? y

autopep8-1.3.2 100% |####################################################################################################################################################################| Time: 0:00:00   1.51 MB/s
html5lib-0.999 100% |####################################################################################################################################################################| Time: 0:00:00   2.05 MB/s
cryptography-1 100% |####################################################################################################################################################################| Time: 0:00:00   8.16 MB/s
astroid-1.5.3- 100% |####################################################################################################################################################################| Time: 0:00:00  18.90 MB/s
jupyter_client 100% |####################################################################################################################################################################| Time: 0:00:00   9.00 MB/s
pylint-1.7.1-p 100% |####################################################################################################################################################################| Time: 0:00:00   8.18 MB/s
cdms2-2017.06. 100% |####################################################################################################################################################################| Time: 0:00:00  12.01 MB/s
+ /home/danlipsa/anaconda2/envs/nigtly-nox-20170626/bin/python -m nb_conda_kernels.install --enable --prefix=/home/danlipsa/anaconda2/envs/nigtly-nox-20170626
Enabling nb_conda_kernels...
Enabled nb_conda_kernels

+ /home/danlipsa/anaconda2/envs/nigtly-nox-20170626/bin/jupyter-nbextension enable nb_conda --py --sys-prefix
Enabling notebook extension nb_conda/main...
      - Validating: OK
Enabling tree extension nb_conda/tree...
      - Validating: OK
+ /home/danlipsa/anaconda2/envs/nigtly-nox-20170626/bin/jupyter-serverextension enable nb_conda --py --sys-prefix
Enabling: nb_conda
- Writing config: /home/danlipsa/anaconda2/envs/nigtly-nox-20170626/etc/jupyter
    - Validating...
      nb_conda  OK

#
# To activate this environment, use:
# > source activate nigtly-nox-20170626
#
# To deactivate this environment, use:
# > source deactivate nigtly-nox-20170626
#

[~/bugs/uvcdat/subplot]$ conda env list
# conda environments:
#
nightly-20170424         /home/danlipsa/anaconda2/envs/nightly-20170424
nigtly-nox-20170502      /home/danlipsa/anaconda2/envs/nigtly-nox-20170502
nigtly-nox-20170626      /home/danlipsa/anaconda2/envs/nigtly-nox-20170626
uvcdat-2.10              /home/danlipsa/anaconda2/envs/uvcdat-2.10
uvcdat-2.8               /home/danlipsa/anaconda2/envs/uvcdat-2.8
root                  *  /home/danlipsa/anaconda2

[~/bugs/uvcdat/subplot]$ source activate nigtly-nox-20170626
(nigtly-nox-20170626) [~/bugs/uvcdat/subplot]$ conda list | grep vtk
vtk-cdat-nox              7.1.0.2.10               py27_0    uvcdat
doutriaux1 commented 7 years ago

@danlipsa no more nox since 2.10 remember. Simply add mesalib

doutriaux1 commented 7 years ago

@danlipsa see: https://github.com/UV-CDAT/uvcdat/releases/tag/v2.10

danlipsa commented 7 years ago

@doutriaux1 Still the wrong VTK. Any ideas?

[~/projects/vtkseismic/src (2d-fixes %)]$ echo $d
20170622
[~/projects/vtkseismic/src (2d-fixes %)]$ conda create -n nightly-${d} -c uvcdat/label/nightly -c conda-forge -c uvcdat uvcdat
Fetching package metadata .................
Solving package specifications: .
Warning: 2 possible package resolutions (only showing differing packages):
  - bioconda::bleach-1.4.2-py27_0, conda-forge::html5lib-0.999999999-py27_0
  - conda-forge::bleach-1.5.0-py27_0, conda-forge::html5lib-0.999-py27_0

Package plan for installation in environment /home/danlipsa/anaconda2/envs/nightly-20170622:

The following NEW packages will be INSTALLED:

    alabaster:                          0.7.10-py27_0          conda-forge         
    asciidata:                          2.10-np112py27_0       uvcdat              
    asn1crypto:                         0.22.0-py27_0          conda-forge         
    astroid:                            1.5.3-py27_0           conda-forge         
    autopep8:                           1.3.2-py27_0           conda-forge         
    babel:                              2.3.4-py27_0           conda-forge         
    backports.functools_lru_cache:      1.3-py27_0             conda-forge         
    backports.shutil_get_terminal_size: 1.0.0-py27_1           conda-forge         
    backports_abc:                      0.5-py27_0             conda-forge         
    basemap:                            1.1.0-np112py27_1      conda-forge         
    binaryio:                           2.10-np112py27_0       uvcdat              
    bleach:                             1.4.2-py27_0           bioconda            
    bzip2:                              1.0.6-1                conda-forge         
    ca-certificates:                    2017.4.17-0            conda-forge         
    cdat_info:                          2.10-py27_3            conda-forge         
    cdms2:                              2017.06.06-np112py27_0 uvcdat/label/nightly
    cdtime:                             2.10-np112py27_0       conda-forge         
    cdutil:                             2.10-py27_0            conda-forge         
    certifi:                            2017.4.17-py27_0       conda-forge         
    cffi:                               1.10.0-py27_0          conda-forge         
    chardet:                            3.0.2-py27_1           conda-forge         
    clapack:                            3.2.1-0                conda-forge         
    cloog:                              0.18.0-0               defaults            
    configparser:                       3.5.0-py27_0           conda-forge         
    cryptography:                       1.9-py27_0             conda-forge         
    cssgrid:                            2.10-np112py27_0       uvcdat              
    curl:                               7.52.1-0               conda-forge         
    cycler:                             0.10.0-py27_0          conda-forge         
    decorator:                          4.0.11-py27_0          conda-forge         
    distarray:                          2.10-py27_0            conda-forge         
    docutils:                           0.13.1-py27_0          conda-forge         
    dsgrid:                             2.10-np112py27_0       uvcdat              
    dv3d:                               2.10-py27_0            uvcdat              
    entrypoints:                        0.2.3-py27_1           conda-forge         
    enum34:                             1.1.6-py27_1           conda-forge         
    eofs:                               1.2.0-py27_0           conda-forge         
    esmf:                               7.0.0-6                conda-forge         
    esmpy:                              7.0.0-py27_1           conda-forge         
    expat:                              2.1.0-2                conda-forge         
    ffmpeg:                             3.2.4-1                conda-forge         
    flake8:                             3.3.0-py27_0           conda-forge         
    fontconfig:                         2.12.1-4               conda-forge         
    freetype:                           2.7-1                  conda-forge         
    functools32:                        3.2.3.2-py27_1         conda-forge         
    g2clib:                             1.6.0-3                conda-forge         
    gcc:                                4.8.5-7                defaults            
    genutil:                            2.10-np112py27_0       conda-forge         
    geos:                               3.5.1-1                conda-forge         
    gmp:                                6.1.2-0                conda-forge         
    hdf4:                               4.2.12-0               conda-forge         
    hdf5:                               1.8.17-11              conda-forge         
    hdf5tools:                          2.10-np112py27_0       uvcdat              
    html5lib:                           0.999999999-py27_0     conda-forge         
    icu:                                58.1-1                 conda-forge         
    idna:                               2.5-py27_0             conda-forge         
    imagesize:                          0.7.1-py27_0           conda-forge         
    ipaddress:                          1.0.18-py27_0          conda-forge         
    ipykernel:                          4.6.1-py27_0           conda-forge         
    ipython:                            5.4.1-py27_0           conda-forge         
    ipython_genutils:                   0.2.0-py27_0           conda-forge         
    ipywidgets:                         6.0.0-py27_0           conda-forge         
    isl:                                0.12.2-0               defaults            
    isort:                              4.2.9-py27_0           conda-forge         
    jasper:                             1.900.1-4              conda-forge         
    jedi:                               0.10.0-py27_0          conda-forge         
    jinja2:                             2.9.5-py27_0           conda-forge         
    jpeg:                               9b-0                   conda-forge         
    jsonschema:                         2.5.1-py27_0           conda-forge         
    jupyter:                            1.0.0-py27_0           conda-forge         
    jupyter_client:                     5.1.0-py27_0           conda-forge         
    jupyter_console:                    5.1.0-py27_0           conda-forge         
    jupyter_core:                       4.3.0-py27_0           conda-forge         
    lapack:                             3.6.1-1                conda-forge         
    lazy-object-proxy:                  1.3.0-py27_0           conda-forge         
    libcdms:                            2.10-2                 conda-forge         
    libcf:                              1.0-py27_0             conda-forge         
    libdrs:                             2.10-1                 conda-forge         
    libdrs_f:                           2.10-py27_0            conda-forge         
    libffi:                             3.2.1-3                conda-forge         
    libgcc:                             5.2.0-0                defaults            
    libgfortran:                        3.0.0-1                defaults            
    libiconv:                           1.14-4                 conda-forge         
    libnetcdf:                          4.4.1.1-4              conda-forge         
    libpng:                             1.6.28-0               conda-forge         
    libsodium:                          1.0.10-0               conda-forge         
    libtiff:                            4.0.6-7                conda-forge         
    libxml2:                            2.9.4-4                conda-forge         
    lmoments:                           2.10-np112py27_0       uvcdat              
    markupsafe:                         1.0-py27_0             conda-forge         
    matplotlib:                         2.0.0-np112py27_2      conda-forge         
    mccabe:                             0.6.1-py27_0           conda-forge         
    mistune:                            0.7.4-py27_0           conda-forge         
    mkl:                                2017.0.1-0             defaults            
    mpc:                                1.0.3-4                conda-forge         
    mpfr:                               3.1.5-0                conda-forge         
    mpich:                              3.2-4                  conda-forge         
    natgrid:                            2.10-np112py27_0       uvcdat              
    nb_conda:                           2.2.0-py27_0           conda-forge         
    nb_conda_kernels:                   2.1.0-py27_0           conda-forge         
    nbconvert:                          5.2.1-py27_1           conda-forge         
    nbformat:                           4.3.0-py27_0           conda-forge         
    ncurses:                            5.9-10                 conda-forge         
    netcdf-fortran:                     4.4.4-3                conda-forge         
    notebook:                           5.0.0-py27_0           conda-forge         
    numpy:                              1.12.1-py27_0          defaults            
    numpydoc:                           0.7.0-py27_0           conda-forge         
    openssl:                            1.0.2k-0               conda-forge         
    ort:                                2.10-np112py27_0       uvcdat              
    ossuuid:                            1.6.2-0                conda-forge         
    output_viewer:                      1.2.2-py27_0           uvcdat              
    pandoc:                             1.19.2-0               conda-forge         
    pandocfilters:                      1.4.1-py27_0           conda-forge         
    pathlib2:                           2.3.0-py27_0           conda-forge         
    pep8:                               1.7.0-py27_0           conda-forge         
    pexpect:                            4.2.1-py27_0           conda-forge         
    pickleshare:                        0.7.3-py27_0           conda-forge         
    pip:                                9.0.1-py27_0           conda-forge         
    proj4:                              4.9.3-4                conda-forge         
    prompt_toolkit:                     1.0.14-py27_0          conda-forge         
    psutil:                             5.2.1-py27_0           conda-forge         
    ptyprocess:                         0.5.2-py27_0           conda-forge         
    pycodestyle:                        2.3.1-py27_0           conda-forge         
    pycparser:                          2.17-py27_0            conda-forge         
    pyflakes:                           1.5.0-py27_0           conda-forge         
    pygments:                           2.2.0-py27_0           conda-forge         
    pylint:                             1.7.1-py27_0           conda-forge         
    pyopenssl:                          16.2.0-py27_0          conda-forge         
    pyparsing:                          2.2.0-py27_0           conda-forge         
    pyproj:                             1.9.5.1-py27_0         conda-forge         
    pyqt:                               4.11.3-py27_1          defaults            
    pyshp:                              1.2.11-py27_0          conda-forge         
    pysocks:                            1.6.7-py27_0           conda-forge         
    python:                             2.7.13-1               conda-forge         
    python-dateutil:                    2.6.0-py27_0           conda-forge         
    pytz:                               2017.2-py27_0          conda-forge         
    pyzmq:                              16.0.2-py27_2          conda-forge         
    qt:                                 4.8.6-3                defaults            
    qtawesome:                          0.4.4-py27_0           conda-forge         
    qtconsole:                          4.3.0-py27_0           conda-forge         
    qtpy:                               1.2.1-py27_0           conda-forge         
    readline:                           6.2-0                  conda-forge         
    regridpack:                         2.10-np112py27_0       uvcdat              
    requests:                           2.18.1-py27_0          conda-forge         
    rope:                               0.10.5-py27_0          conda-forge         
    scandir:                            1.5-py27_1             conda-forge         
    scikit-learn:                       0.18.1-np112py27_1     defaults            
    scipy:                              0.19.0-np112py27_0     defaults            
    setuptools:                         33.1.1-py27_0          conda-forge         
    shgrid:                             2.10-np112py27_0       uvcdat              
    simplegeneric:                      0.8.1-py27_0           conda-forge         
    singledispatch:                     3.4.0.3-py27_0         conda-forge         
    sip:                                4.16.5-py27_0          defaults            
    six:                                1.10.0-py27_1          conda-forge         
    snowballstemmer:                    1.2.1-py27_0           conda-forge         
    sphinx:                             1.6.2-py27_0           conda-forge         
    sphinxcontrib-websupport:           1.0.1-py27_0           conda-forge         
    spyder:                             3.1.4-py27_0           conda-forge         
    sqlite:                             3.13.0-1               conda-forge         
    ssl_match_hostname:                 3.5.0.1-py27_1         conda-forge         
    subprocess32:                       3.2.7-py27_0           conda-forge         
    terminado:                          0.6-py27_0             conda-forge         
    testpath:                           0.3-py27_0             conda-forge         
    thermo:                             2.10-py27_0            uvcdat              
    tk:                                 8.5.19-1               conda-forge         
    tornado:                            4.5.1-py27_0           conda-forge         
    traitlets:                          4.3.2-py27_0           conda-forge         
    trends:                             2.10-np112py27_0       uvcdat              
    typing:                             3.6.1-py27_0           conda-forge         
    udunits2:                           2.2.23-0               conda-forge         
    urllib3:                            1.21.1-py27_1          conda-forge         
    uvcdat:                             2.10-2                 uvcdat              
    uvcmetrics:                         2.2.1-np112py27_0      uvcdat              
    vcs:                                2.10-2                 uvcdat              
    vcsaddons:                          2.10-py27_0            uvcdat              
    vistrails:                          2.8-2                  uvcdat              
    vtk-cdat:                           7.1.0.2.10-py27_1      uvcdat              
    wcwidth:                            0.1.7-py27_0           conda-forge         
    webencodings:                       0.5-py27_0             conda-forge         
    wheel:                              0.29.0-py27_0          conda-forge         
    widgetsnbextension:                 2.0.0-py27_0           conda-forge         
    wk:                                 2.10-py27_0            uvcdat              
    wrapt:                              1.10.8-py27_0          conda-forge         
    x264:                               20131217-3             conda-forge         
    xmgrace:                            2.10-py27_0            uvcdat              
    xz:                                 5.2.2-0                conda-forge         
    zeromq:                             4.2.1-1                conda-forge         
    zlib:                               1.2.11-0               conda-forge         
    zonalmeans:                         2.10-np112py27_0       uvcdat              

Proceed ([y]/n)? 

scikit-learn-0 100% |####################################################################################################################################################################| Time: 0:00:03   3.44 MB/s
+ /home/danlipsa/anaconda2/envs/nightly-20170622/bin/python -m nb_conda_kernels.install --enable --prefix=/home/danlipsa/anaconda2/envs/nightly-20170622
Enabling nb_conda_kernels...
Enabled nb_conda_kernels

+ /home/danlipsa/anaconda2/envs/nightly-20170622/bin/jupyter-nbextension enable nb_conda --py --sys-prefix
Enabling notebook extension nb_conda/main...
      - Validating: OK
Enabling tree extension nb_conda/tree...
      - Validating: OK
+ /home/danlipsa/anaconda2/envs/nightly-20170622/bin/jupyter-serverextension enable nb_conda --py --sys-prefix
Enabling: nb_conda
- Writing config: /home/danlipsa/anaconda2/envs/nightly-20170622/etc/jupyter
    - Validating...
      nb_conda  OK

#
# To activate this environment, use:
# > source activate nightly-20170622
#
# To deactivate this environment, use:
# > source deactivate nightly-20170622
#

[~/projects/vtkseismic/src (2d-fixes %)]$ source activate nightly-20170622
(nightly-20170622) [~/projects/vtkseismic/src (2d-fixes %)]$ conda list | grep vtk
vtk-cdat                  7.1.0.2.10               py27_1    uvcdat
(nightly-20170622) [~/projects/vtkseismic/src (2d-fixes %)]$
doutriaux1 commented 7 years ago

@danlipsa my bad I only had the mesalib ones in the nightly label, the regular were still only under the test label. Try again should be good now. Remember top add mesalib to your create line to get the nox ones.

doutriaux1 commented 7 years ago

ok had a typo, so really try now 😉

danlipsa commented 7 years ago

@doutriaux1 It's getting there. I have the right VTK, but still the old vcs (no evenly spaced streamlines in there):

(nightly-20170626) [~/projects/vtkseismic/src (2d-fixes *%)]$ conda list | grep vtk
vtk-cdat                  7.1.0.2.10.2017.06.21.10.36.1c03d1d03b1c12d99dd090ba4c5ca078e2d9612f          py27_0    uvcdat/label/nightly
(nightly-20170626) [~/projects/vtkseismic/src (2d-fixes *%)]$ conda list | grep vcs
vcs                       2.10                          2    uvcdat
vcsaddons                 2.10                     py27_0    uvcdat
(nightly-20170626) [~/projects/vtkseismic/src (2d-fixes *%)]$
doutriaux1 commented 7 years ago

@danlipsa yes vcs nightlies are not uploaded at the moment, that's in the last PR waiting. I'm fixing it as we speak.

danlipsa commented 7 years ago

@doutriaux1 Great. Let me know when that's fixed. Thanks Charles!