AnthonyDiGirolamo
commented
11 years ago Here is the full build log:
==> cmake -D CMAKE_INSTALL_PREFIX:STRING=/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2 -D CDAT_ANONYMOUS_LOG:STRING=OFF -D MD5_EXECUTABLE:STRING=md5sum -D GIT_PROTOCOL:STRING=https:// -D QT_QMAKE_EXECUTABLE:STRING=/sw/x
k6/qt/4.8.5/sles11.1_gnu4.3.4/bin/qmake -D QT_QTCORE_INCLUDE_DIR:STRING=/sw/xk6/qt/4.8.5/sles11.1_gnu4.3.4/include -D QT_QTCORE_LIBRARY:STRING=/sw/xk6/qt/4.8.5/sles11.1_gnu4.3.4/lib -D CDAT_USE_SYSTEM_MPI:BOOL=tr
ue -D CDAT_BUILD_GUI:BOOL=false -D CDAT_BUILD_GRAPHICS:BOOL=false -D MPI_C_COMPILER:STRING=cc -D MPI_CXX_COMPILER:STRING=CC -D MPI_Fortran_COMPILER:STRING=ftn -D MPIEXEC:STRING=aprun -D MPI_CXX_COMPILE_FLAGS:STRI
NG=-I/opt/cray/mpt/5.6.3/gni/mpich2-gnu/47/include -D MPI_CXX_LINK_FLAGS:STRING='-L/opt/cray/mpt/5.6.3/gni/mpich2-gnu/47/lib -lmpichcxx_gnu_47 -lmpich_gnu_47' -D MPI_CXX_COMPILE_FLAGS:STRING=-I/opt/cray/mpt/5.6.3
/gni/mpich2-gnu/47/include -D MPI_CXX_LINK_FLAGS:STRING='-L/opt/cray/mpt/5.6.3/gni/mpich2-gnu/47/lib -lmpichcxx_gnu_47 -lmpich_gnu_47' -D MPI_C_COMPILE_FLAGS:STRING=-I/opt/cray/mpt/5.6.3/gni/mpich2-gnu/47/include
-D MPI_C_LINK_FLAGS:STRING='-L/opt/cray/mpt/5.6.3/gni/mpich2-gnu/47/lib -lmpich_gnu_47' ../source
[INFO] We reset your path to: /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/Externals/bin:/opt/cray/atp/1.6.1/bin:/opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin:/opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin:/opt/c
ray/pdsh/2.26-1.0401.37449.1.1.gem/bin:/opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin:/opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin:/opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin:/opt/cray/configuration/1.0-1.
0401.35391.1.2.gem/bin:/opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin:/opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin:/opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin:/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin:/opt/cray
/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin:/opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin:/opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin:/opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin:/opt/cray/job/1.5.5-0.1_2.0
401.35380.1.10.gem/bin:/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin:/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin:/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin:/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin:/opt/cray/
udreg/2.3.2-1.0401.5929.3.3.gem/bin:/opt/gcc/4.7.2/bin:/opt/cray/xt-asyncpe/5.17/bin:/sw/xk6/cmake/2.8.11.2/sles11.1_gnu4.3.4/bin:/sw/tools/smithy/bin:/ccs/home/lmd/apps/vim/bin:/sw/cave/tmux/1.7/centos5.8_gnu4.1
.2/bin:/sw/cave/bash/4.2/centos5.8_gnu4.1.2/bin:/sw/cave/zsh/5.0.0/centos5.8_gnu4.1.2/bin:/sw/cave/vim/7.3/centos5.8_gnu4.1.2/bin:/ccs/home/lmd/Preferences/bin:/usr/local/bin:/ccs/home/lmd/apps/tree/bin:/ccs/home
/lmd/apps/ctags/bin:/ccs/home/lmd/apps/git/bin:/ccs/home/lmd/apps/ack/bin:/ccs/home/lmd/apps/tmux/bin:/ccs/home/lmd/apps/bash/bin:/ccs/home/lmd/apps/zsh/bin:/usr/local/bin:/usr/local/sbin:/ccs/home/lmd/apps/vim/b
in:/sw/cave/tmux/1.7/centos5.8_gnu4.1.2/bin:/sw/cave/bash/4.2/centos5.8_gnu4.1.2/bin:/sw/cave/zsh/5.0.0/centos5.8_gnu4.1.2/bin:/sw/cave/vim/7.3/centos5.8_gnu4.1.2/bin:/ccs/home/lmd/Preferences/bin:/ccs/home/lmd/a
pps/tree/bin:/ccs/home/lmd/apps/ctags/bin:/ccs/home/lmd/apps/git/bin:/ccs/home/lmd/apps/ack/bin:/ccs/home/lmd/apps/tmux/bin:/ccs/home/lmd/apps/bash/bin:/ccs/home/lmd/apps/zsh/bin:/ccs/home/lmd/.gem/ruby/1.9.1/bin
:/sw/xk6/ruby/1.9.3/sles11.1_gnu4.3.4/lib/ruby/gems/1.9.1/bin:/sw/xk6/ruby/1.9.3/sles11.1_gnu4.3.4/bin:/sw/xk6/git/1.8.2.1/sles11.1_gnu4.3.4/bin:/sw/xk6/altd/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.2/sles11.1_gnu4.3.4
/lustredu/bin:/opt/moab/default/bin:/opt/torque/default/bin:/opt/cray/eslogin/eswrap/1.0.15/bin:/opt/modules/3.2.6.6/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit
/sbin:/usr/lib/qt3/bin:/opt/public/bin:/opt/cray/bin
[INFO] Updating git submodules
-- CMAKE_Fortran_COMPILER_ID = 'GNU'.
-- Fortran_VERSION = '4.7.2'
-- Fortran_COMP_LIB_SUBDIR = gfortran4.7
-- RESULTS FOR cmake detected fortran implicit libraries:
-- CMAKE_Fortran_IMPLICIT_LINK_LIBRARIES= gfortran;m;quadmath;m;c
-- CMAKE_Fortran_IMPLICIT_LINK_DIRECTORIES= /opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2;/opt/gcc/4.7.2/snos/lib64;/lib64;/usr/lib64;/opt/gcc/4.7.2/snos/lib
-- RESULTS FOR fortran implicit libraries after removing duplicates and wrapper libraries:
-- Fortran_IMPLICIT_LIBRARIES = /opt/gcc/4.7.2/snos/lib64/libgfortran.so;/opt/gcc/4.7.2/snos/lib64/libquadmath.so
-- Fortran_IMPLICIT_LIBRARY_NAMES = gfortran;quadmath
-- Fortran_IMPLICIT_LIBRARY_DIRS = /opt/gcc/4.7.2/snos/lib64
-- Fortran_IMPLICIT_LIBFLAGS =
CMake Warning (dev) at /sw/xk6/cmake/2.8.11.2/sles11.1_gnu4.3.4/share/cmake-2.8/Modules/FortranCInterface.cmake:215 (message):
No FortranCInterface mangling known for mysub
Call Stack (most recent call first):
contrib/sciMake/sciFortranChecks.cmake:255 (FortranCInterface_HEADER)
CMake/cdat_modules/esmf_pkg.cmake:24 (include)
CMakeLists.txt:366 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at /sw/xk6/cmake/2.8.11.2/sles11.1_gnu4.3.4/share/cmake-2.8/Modules/FortranCInterface.cmake:201 (message):
No FortranCInterface mangling known for mymod:my_sub
Call Stack (most recent call first):
contrib/sciMake/sciFortranChecks.cmake:255 (FortranCInterface_HEADER)
CMake/cdat_modules/esmf_pkg.cmake:24 (include)
CMakeLists.txt:366 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Compiling trycompile/modulesrcfile.f90.
-- Fortran_COMPILER_NAME = gfortran
-- TX_FC_MODULENAME_CAPITALIZED = FALSE
-- TX_FC_MODULE_SUFFIX = mod
-- CMAKE_Fortran_FLAGS_FULL = -fPIC -O3
-- CMAKE_Fortran_FLAGS_RELEASE = -fPIC -O3
-- CMAKE_Fortran_FLAGS_RELWITHDEBINFO = -O2 -g -DNDEBUG
-- CMAKE_Fortran_FLAGS_DEBUG = -fPIC -O0 -g -Wp,-DDEBUG
-- CMAKE_Fortran_FLAGS = -ffixed-line-length-132 -fopenmp -pipe
-- Found MD5: md5sum
[INFO] Could not system mpi4py,
-- Unable to determine MPI from MPI driver /opt/cray/xt-asyncpe/5.17/bin/cc
-- Unable to determine MPI from MPI driver /opt/cray/xt-asyncpe/5.17/bin/CC
-- Unable to determine MPI from MPI driver /opt/cray/xt-asyncpe/5.17/bin/ftn
[INFO] version 2.7.4 of PYTHON is required by UVCDAT
[INFO] Building python at /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/bin/python
Could not detect shapely, /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/bin/python
[INFO] Removing external package Wget
[DEBUG] packages CDAT;CMOR;CURL;Cython;ESMF;g2clib;g2clib;gdal;GEOS;HDF5;pyzmq;tornado;IPYTHON;jasper;jpeg;LAPACK;libcf;libXML2;libXSLT;Mpi4py;MyProxyClient;Ne
arm;PyTables;Python;readline;scikits;SCIPY;setuptools;distribute;pip;Shapely;Sphinx;termcap;udunits2;uuid;YASM;zlib;CDATLogger
[INFO] Package --- pkgconfig --- will be built
[INFO] Package --- HDF5 --- will be built
[INFO] Package --- termcap --- will be built
[INFO] Package --- readline --- will be built
[INFO] Package --- libXML2 --- will be built
[INFO] Package --- libXSLT --- will be built
[INFO] Package --- zlib --- will be built
[INFO] Package --- Python --- will be built
[INFO] Package --- png --- will be built
[INFO] Package --- CURL --- will be built
[INFO] Package --- NetCDF --- will be built
[INFO] Package --- uuid --- will be built
[INFO] Package --- udunits2 --- will be built
[INFO] Package --- CMOR --- will be built
[INFO] Package --- LAPACK --- will be built
[INFO] Package --- NUMPY --- will be built
[INFO] Package --- jpeg --- will be built
[INFO] Package --- jasper --- will be built
[INFO] Package --- g2clib --- will be built
[INFO] Package --- libcf --- will be built
[INFO] Package --- CDAT --- will be built
[INFO] Package --- Cython --- will be built
[INFO] Package --- MPI --- will be built
[INFO] Package --- ESMF --- will be built
[INFO] Package --- setuptools --- will be built
[INFO] Package --- GEOS --- will be built
[INFO] Package --- distribute --- will be built
PIP CERET:,
[INFO] Package --- pip --- will be built
PIP CERET:,
[INFO] Package --- Sphinx --- will be built
PIP CERET:,
[INFO] Package --- pyzmq --- will be built
PIP CERET:,
[INFO] Package --- tornado --- will be built
PIP CERET:,
[INFO] Package --- MyProxyClient --- will be built
PIP CERET:,
[INFO] Package --- Numexpr --- will be built
PIP CERET:,
[INFO] Package --- IPYTHON --- will be built
[INFO] Package --- Mpi4py --- will be built
[INFO] Package --- NetCDFPLUS --- will be built
[INFO] Package --- pyspharm --- will be built
[INFO] Package --- PyTables --- will be built
PIP CERET:,
[INFO] Package --- SCIPY --- will be built
[INFO] Package --- scikits --- will be built
[INFO] Package --- Shapely --- will be built
[INFO] Package --- YASM --- will be built
[INFO] Package --- CDATLogger --- will be built
[INFO] CDAT external include directories:
[INFO] System libraries:
[INFO] CDAT external link directories:
-- Configuring done
-- Generating done
-- Build files have been written to: /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build
==> make
Scanning dependencies of target pkgconfig
[ 0%] Creating directories for 'pkgconfig'
[ 1%] Performing download step (download, verify and extract) for 'pkgconfig'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/pkg-config-0.23.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/pkgconfig-prefix/src/pkg-config-0.23.tar.gz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 40% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/pkgconfig-prefix/src/pkg-config-0.23.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/pkgconfig-prefix/src/pkg-config-0.23.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/pkgconfig'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 1%] No patch step for 'pkgconfig'
[ 1%] No update step for 'pkgconfig'
[ 2%] Performing configure step for 'pkgconfig'
-- pkgconfig configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/pkgconfig-prefix/src/pkgconfig-stamp/pkgconfig-configure-*.log
[ 2%] Performing build step for 'pkgconfig'
-- pkgconfig build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/pkgconfig-prefix/src/pkgconfig-stamp/pkgconfig-build-*.log
[ 2%] Performing install step for 'pkgconfig'
-- pkgconfig install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/pkgconfig-prefix/src/pkgconfig-stamp/pkgconfig-install-*.log
[ 2%] Completed 'pkgconfig'
[ 2%] Built target pkgconfig
Scanning dependencies of target zlib
[ 2%] Creating directories for 'zlib'
[ 2%] Performing download step (download, verify and extract) for 'zlib'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/zlib-1.2.5.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/zlib-1.2.5.tar.gz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 5% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/zlib-1.2.5.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/zlib-1.2.5.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/zlib'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 2%] Performing patch step for 'zlib'
[ 3%] No update step for 'zlib'
[ 3%] Performing configure step for 'zlib'
-- zlib configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/zlib-prefix/src/zlib-stamp/zlib-configure-*.log
[ 4%] Performing build step for 'zlib'
-- zlib build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/zlib-prefix/src/zlib-stamp/zlib-build-*.log
[ 5%] Performing install step for 'zlib'
-- zlib install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/zlib-prefix/src/zlib-stamp/zlib-install-*.log
[ 5%] Completed 'zlib'
[ 5%] Built target zlib
Scanning dependencies of target CURL
[ 5%] Creating directories for 'CURL'
[ 6%] Performing download step (download, verify and extract) for 'CURL'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/curl-7.22.0.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/curl-7.22.0.tar.gz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 6% complete]
-- [download 46% complete]
-- [download 79% complete]
-- [download 99% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/curl-7.22.0.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/curl-7.22.0.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/CURL'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 6%] No patch step for 'CURL'
[ 6%] No update step for 'CURL'
[ 7%] Performing configure step for 'CURL'
-- CURL configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/CURL-prefix/src/CURL-stamp/CURL-configure-*.log
[ 7%] Performing build step for 'CURL'
-- CURL build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/CURL-prefix/src/CURL-stamp/CURL-build-*.log
[ 7%] Performing install step for 'CURL'
-- CURL install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/CURL-prefix/src/CURL-stamp/CURL-install-*.log
[ 8%] Completed 'CURL'
[ 8%] Built target CURL
Scanning dependencies of target HDF5
[ 9%] Creating directories for 'HDF5'
[ 9%] Performing download step (download, verify and extract) for 'HDF5'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/hdf5-1.8.8.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/hdf5-1.8.8.tar.gz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 10% complete]
-- [download 38% complete]
-- [download 78% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/hdf5-1.8.8.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/hdf5-1.8.8.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/HDF5'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 10%] No patch step for 'HDF5'
[ 10%] No update step for 'HDF5'
[ 10%] Performing configure step for 'HDF5'
-- HDF5 configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/HDF5-prefix/src/HDF5-stamp/HDF5-configure-*.log
[ 10%] Performing build step for 'HDF5'
-- HDF5 build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/HDF5-prefix/src/HDF5-stamp/HDF5-build-*.log
[ 10%] Performing install step for 'HDF5'
-- HDF5 install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/HDF5-prefix/src/HDF5-stamp/HDF5-install-*.log
[ 10%] Completed 'HDF5'
[ 10%] Built target HDF5
Scanning dependencies of target NetCDF
[ 10%] Creating directories for 'NetCDF'
[ 10%] Performing download step (download, verify and extract) for 'NetCDF'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/netcdf-4.3.0.uvcdat.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/netcdf-4.3.0.uvcdat.tar.gz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 4% complete]
-- [download 27% complete]
-- [download 67% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/netcdf-4.3.0.uvcdat.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/netcdf-4.3.0.uvcdat.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/netcdf'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 10%] No patch step for 'NetCDF'
[ 11%] No update step for 'NetCDF'
[ 11%] Performing configure step for 'NetCDF'
-- NetCDF configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/NetCDF-prefix/src/NetCDF-stamp/NetCDF-configure-*.log
[ 11%] Performing build step for 'NetCDF'
-- NetCDF build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/NetCDF-prefix/src/NetCDF-stamp/NetCDF-build-*.log
[ 12%] Performing install step for 'NetCDF'
-- NetCDF install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/NetCDF-prefix/src/NetCDF-stamp/NetCDF-install-*.log
[ 12%] Completed 'NetCDF'
[ 12%] Built target NetCDF
Scanning dependencies of target uuid
[ 13%] Creating directories for 'uuid'
[ 13%] Performing download step (download, verify and extract) for 'uuid'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/uuid-1.6.2.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/uuid-1.6.2.tar.gz'
timeout='none'
attempt 1
-- [download 1% complete]
-- [download 81% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/uuid-1.6.2.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/uuid-1.6.2.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/uuid'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 14%] No patch step for 'uuid'
[ 14%] No update step for 'uuid'
[ 14%] Performing configure step for 'uuid'
-- uuid configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/uuid-prefix/src/uuid-stamp/uuid-configure-*.log
[ 14%] Performing build step for 'uuid'
-- uuid build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/uuid-prefix/src/uuid-stamp/uuid-build-*.log
[ 14%] Performing install step for 'uuid'
-- uuid install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/uuid-prefix/src/uuid-stamp/uuid-install-*.log
[ 14%] Completed 'uuid'
[ 14%] Built target uuid
Scanning dependencies of target termcap
[ 15%] Creating directories for 'termcap'
[ 15%] Performing download step (download, verify and extract) for 'termcap'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/termcap-1.3.1.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/termcap-1.3.1.tar.gz'
timeout='none'
attempt 1
-- [download 1% complete]
-- [download 94% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/termcap-1.3.1.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/termcap-1.3.1.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/termcap'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 16%] No patch step for 'termcap'
[ 16%] No update step for 'termcap'
[ 16%] Performing configure step for 'termcap'
-- termcap configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/termcap-prefix/src/termcap-stamp/termcap-configure-*.log
[ 16%] Performing build step for 'termcap'
-- termcap build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/termcap-prefix/src/termcap-stamp/termcap-build-*.log
[ 16%] Performing install step for 'termcap'
-- termcap install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/termcap-prefix/src/termcap-stamp/termcap-install-*.log
[ 16%] Completed 'termcap'
[ 16%] Built target termcap
Scanning dependencies of target readline
[ 17%] Creating directories for 'readline'
[ 17%] Performing download step (download, verify and extract) for 'readline'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/readline-6.2.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/readline-6.2.tar.gz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 33% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/readline-6.2.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/readline-6.2.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/readline'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 18%] Performing patch step for 'readline'
[ 18%] No update step for 'readline'
[ 18%] Performing configure step for 'readline'
-- readline configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/readline-prefix/src/readline-stamp/readline-configure-*.log
[ 18%] Performing build step for 'readline'
-- readline build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/readline-prefix/src/readline-stamp/readline-build-*.log
[ 18%] Performing install step for 'readline'
-- readline install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/readline-prefix/src/readline-stamp/readline-install-*.log
[ 18%] Completed 'readline'
[ 18%] Built target readline
Scanning dependencies of target libXML2
[ 18%] Creating directories for 'libXML2'
[ 18%] Performing download step (download, verify and extract) for 'libXML2'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/libxml2-2.7.8.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libxml2-2.7.8.tar.gz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 5% complete]
-- [download 15% complete]
-- [download 30% complete]
-- [download 43% complete]
-- [download 57% complete]
-- [download 72% complete]
-- [download 84% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libxml2-2.7.8.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libxml2-2.7.8.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/libXML2'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 18%] No patch step for 'libXML2'
[ 19%] No update step for 'libXML2'
[ 19%] Performing configure step for 'libXML2'
-- libXML2 configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libXML2-prefix/src/libXML2-stamp/libXML2-configure-*.log
[ 20%] Performing build step for 'libXML2'
-- libXML2 build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libXML2-prefix/src/libXML2-stamp/libXML2-build-*.log
[ 20%] Performing install step for 'libXML2'
-- libXML2 install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libXML2-prefix/src/libXML2-stamp/libXML2-install-*.log
[ 21%] Completed 'libXML2'
[ 21%] Built target libXML2
Scanning dependencies of target libXSLT
[ 21%] Creating directories for 'libXSLT'
[ 22%] Performing download step (download, verify and extract) for 'libXSLT'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/libxslt-1.1.26.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libxslt-1.1.26.tar.gz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 4% complete]
-- [download 28% complete]
-- [download 67% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libxslt-1.1.26.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libxslt-1.1.26.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/libXSLT'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 22%] No patch step for 'libXSLT'
[ 22%] No update step for 'libXSLT'
[ 23%] Performing configure step for 'libXSLT'
-- libXSLT configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libXSLT-prefix/src/libXSLT-stamp/libXSLT-configure-*.log
[ 23%] Performing build step for 'libXSLT'
-- libXSLT build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libXSLT-prefix/src/libXSLT-stamp/libXSLT-build-*.log
[ 23%] Performing install step for 'libXSLT'
-- libXSLT install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libXSLT-prefix/src/libXSLT-stamp/libXSLT-install-*.log
[ 23%] Completed 'libXSLT'
[ 23%] Built target libXSLT
Scanning dependencies of target Python
[ 23%] Creating directories for 'Python'
[ 24%] Performing download step (download, verify and extract) for 'Python'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/Python-2.7.4.tar.bz2'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/Python-2.7.4.tar.bz2'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 9% complete]
-- [download 20% complete]
-- [download 27% complete]
-- [download 35% complete]
-- [download 51% complete]
-- [download 97% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/Python-2.7.4.tar.bz2'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/Python-2.7.4.tar.bz2'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/Python'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 24%] Performing patch step for 'Python'
patching file Modules/_sqlite/connection.c
Reversed (or previously applied) patch detected! Assume -R? [n]
Apply anyway? [n]
Skipping patch.
2 out of 2 hunks ignored -- saving rejects to file Modules/_sqlite/connection.c.rej
[ 24%] Performing update step for 'Python'
-- Python update command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/Python-prefix/src/Python-stamp/Python-update-*.log
[ 24%] Performing configure step for 'Python'
-- Python configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/Python-prefix/src/Python-stamp/Python-configure-*.log
[ 25%] Performing build step for 'Python'
-- Python build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/Python-prefix/src/Python-stamp/Python-build-*.log
[ 25%] Performing install step for 'Python'
-- Python install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/Python-prefix/src/Python-stamp/Python-install-*.log
[ 26%] Completed 'Python'
[ 26%] Built target Python
Scanning dependencies of target libcf
[ 26%] Creating directories for 'libcf'
[ 26%] Performing download step (download, verify and extract) for 'libcf'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/libcf-1.0-beta11.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libcf-1.0-beta11.tar.gz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 63% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libcf-1.0-beta11.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libcf-1.0-beta11.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/libcf'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 27%] No patch step for 'libcf'
[ 27%] No update step for 'libcf'
[ 27%] Performing configure step for 'libcf'
-- libcf configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libcf-prefix/src/libcf-stamp/libcf-configure-*.log
[ 27%] Performing build step for 'libcf'
-- libcf build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libcf-prefix/src/libcf-stamp/libcf-build-*.log
[ 28%] Performing install step for 'libcf'
-- libcf install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libcf-prefix/src/libcf-stamp/libcf-install-*.log
[ 28%] Completed 'libcf'
[ 28%] Built target libcf
Scanning dependencies of target jpeg
[ 28%] Creating directories for 'jpeg'
[ 28%] Performing download step (download, verify and extract) for 'jpeg'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/jpegsrc.v8c.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/jpegsrc.v8c.tar.gz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 37% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/jpegsrc.v8c.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/jpegsrc.v8c.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/jpeg'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 29%] No patch step for 'jpeg'
[ 29%] No update step for 'jpeg'
[ 29%] Performing configure step for 'jpeg'
-- jpeg configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/jpeg-prefix/src/jpeg-stamp/jpeg-configure-*.log
[ 29%] Performing build step for 'jpeg'
-- jpeg build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/jpeg-prefix/src/jpeg-stamp/jpeg-build-*.log
[ 30%] Performing install step for 'jpeg'
-- jpeg install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/jpeg-prefix/src/jpeg-stamp/jpeg-install-*.log
[ 30%] Completed 'jpeg'
[ 30%] Built target jpeg
Scanning dependencies of target jasper
[ 31%] Creating directories for 'jasper'
[ 31%] Performing download step (download, verify and extract) for 'jasper'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/jasper-1.900.1.tgz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/jasper-1.900.1.tgz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 15% complete]
-- [download 59% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/jasper-1.900.1.tgz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/jasper-1.900.1.tgz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/jasper'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 31%] No patch step for 'jasper'
[ 31%] No update step for 'jasper'
[ 32%] Performing configure step for 'jasper'
-- jasper configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/jasper-prefix/src/jasper-stamp/jasper-configure-*.log
[ 32%] Performing build step for 'jasper'
-- jasper build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/jasper-prefix/src/jasper-stamp/jasper-build-*.log
[ 32%] Performing install step for 'jasper'
-- jasper install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/jasper-prefix/src/jasper-stamp/jasper-install-*.log
[ 32%] Completed 'jasper'
[ 32%] Built target jasper
Scanning dependencies of target png
[ 32%] Creating directories for 'png'
[ 32%] Performing download step (download, verify and extract) for 'png'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/libpng-1.5.1.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libpng-1.5.1.tar.gz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 4% complete]
-- [download 71% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libpng-1.5.1.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/libpng-1.5.1.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/png'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 33%] No patch step for 'png'
[ 33%] No update step for 'png'
[ 33%] Performing configure step for 'png'
-- png configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/png-prefix/src/png-stamp/png-configure-*.log
[ 33%] Performing build step for 'png'
-- png build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/png-prefix/src/png-stamp/png-build-*.log
[ 34%] Performing install step for 'png'
-- png install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/png-prefix/src/png-stamp/png-install-*.log
[ 34%] Completed 'png'
[ 34%] Built target png
Scanning dependencies of target g2clib
[ 34%] Creating directories for 'g2clib'
[ 34%] Performing download step (download, verify and extract) for 'g2clib'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/g2clib-1.2.5.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/g2clib-1.2.5.tar.gz'
timeout='none'
attempt 1
-- [download 3% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/g2clib-1.2.5.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/g2clib-1.2.5.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/g2clib'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 34%] No patch step for 'g2clib'
[ 35%] No update step for 'g2clib'
[ 35%] No configure step for 'g2clib'
[ 36%] Performing build step for 'g2clib'
-- g2clib build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/g2clib-prefix/src/g2clib-stamp/g2clib-build-*.log
[ 36%] Performing install step for 'g2clib'
-- g2clib install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/g2clib-prefix/src/g2clib-stamp/g2clib-install-*.log
[ 37%] Completed 'g2clib'
[ 37%] Built target g2clib
Scanning dependencies of target udunits2
[ 37%] Creating directories for 'udunits2'
[ 38%] Performing download step (download, verify and extract) for 'udunits2'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/udunits-2.1.24.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/udunits-2.1.24.tar.gz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 43% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/udunits-2.1.24.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/udunits-2.1.24.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/udunits2'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 38%] No patch step for 'udunits2'
[ 38%] No update step for 'udunits2'
[ 39%] Performing configure step for 'udunits2'
-- udunits2 configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/udunits2-prefix/src/udunits2-stamp/udunits2-configure-*.log
[ 39%] Performing build step for 'udunits2'
-- udunits2 build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/udunits2-prefix/src/udunits2-stamp/udunits2-build-*.log
[ 39%] Performing install step for 'udunits2'
-- udunits2 install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/udunits2-prefix/src/udunits2-stamp/udunits2-install-*.log
[ 39%] Completed 'udunits2'
[ 39%] Built target udunits2
Scanning dependencies of target CMOR
[ 39%] Creating directories for 'CMOR'
[ 39%] No download step for 'CMOR'
[ 39%] No patch step for 'CMOR'
[ 40%] No update step for 'CMOR'
[ 40%] Performing configure step for 'CMOR'
-- CMOR configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/CMOR-prefix/src/CMOR-stamp/CMOR-configure-*.log
[ 40%] No build step for 'CMOR'
[ 41%] No install step for 'CMOR'
[ 41%] Completed 'CMOR'
[ 41%] Built target CMOR
Scanning dependencies of target LAPACK
[ 41%] Creating directories for 'LAPACK'
[ 42%] Performing download step (download, verify and extract) for 'LAPACK'
-- downloading...
src='http://www.netlib.org/lapack/lapack-3.4.0.tgz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/lapack-3.4.0.tgz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 79% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/lapack-3.4.0.tgz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/lapack-3.4.0.tgz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/LAPACK'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 42%] No patch step for 'LAPACK'
[ 42%] No update step for 'LAPACK'
[ 42%] Performing configure step for 'LAPACK'
-- LAPACK configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/LAPACK-prefix/src/LAPACK-stamp/LAPACK-configure-*.log
[ 43%] Performing build step for 'LAPACK'
-- LAPACK build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/LAPACK-prefix/src/LAPACK-stamp/LAPACK-build-*.log
[ 43%] Performing install step for 'LAPACK'
-- LAPACK install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/LAPACK-prefix/src/LAPACK-stamp/LAPACK-install-*.log
[ 44%] Completed 'LAPACK'
[ 44%] Built target LAPACK
Scanning dependencies of target NUMPY
[ 45%] Creating directories for 'NUMPY'
[ 45%] Performing download step (download, verify and extract) for 'NUMPY'
-- downloading...
src='http://uv-cdat.llnl.gov/cdat/resources/numpy-1.7.1.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/numpy-1.7.1.tar.gz'
timeout='none'
attempt 1
-- [download 0% complete]
-- [download 1% complete]
-- [download 26% complete]
-- [download 88% complete]
-- [download 100% complete]
-- downloading... done
-- verifying file...
file='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/numpy-1.7.1.tar.gz'
-- verifying file... done
-- extracting...
src='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/numpy-1.7.1.tar.gz'
dst='/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/build/NUMPY'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 45%] No patch step for 'NUMPY'
[ 45%] No update step for 'NUMPY'
[ 46%] Performing configure step for 'NUMPY'
-- NUMPY configure command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/NUMPY-prefix/src/NUMPY-stamp/NUMPY-configure-*.log
[ 46%] Performing build step for 'NUMPY'
-- NUMPY build command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/NUMPY-prefix/src/NUMPY-stamp/NUMPY-build-*.log
[ 46%] Performing install step for 'NUMPY'
-- NUMPY install command succeeded. See also /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/NUMPY-prefix/src/NUMPY-stamp/NUMPY-install-*.log
[ 46%] Completed 'NUMPY'
[ 46%] Built target NUMPY
Scanning dependencies of target CDAT
[ 46%] Creating directories for 'CDAT'
[ 47%] No download step for 'CDAT'
[ 47%] No patch step for 'CDAT'
[ 47%] No update step for 'CDAT'
[ 48%] No configure step for 'CDAT'
[ 48%] No build step for 'CDAT'
[ 48%] Performing install step for 'CDAT'
Running cdat install with path: /opt/cray/atp/1.6.1/bin:/opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin:/opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin:/opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin:/opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin:/opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin:/opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin:/opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin:/opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin:/opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin:/opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin:/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin:/opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin:/opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin:/opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin:/opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin:/opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin:/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin:/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin:/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin:/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin:/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin:/opt/gcc/4.7.2/bin:/opt/cray/xt-asyncpe/5.17/bin:/sw/xk6/cmake/2.8.11.2/sles11.1_gnu4.3.4/bin:/sw/tools/smithy/bin:/ccs/home/lmd/apps/vim/bin:/sw/cave/tmux/1.7/centos5.8_gnu4.1.2/bin:/sw/cave/bash/4.2/centos5.8_gnu4.1.2/bin:/sw/cave/zsh/5.0.0/centos5.8_gnu4.1.2/bin:/sw/cave/vim/7.3/centos5.8_gnu4.1.2/bin:/ccs/home/lmd/Preferences/bin:/usr/local/bin:/ccs/home/lmd/apps/tree/bin:/ccs/home/lmd/apps/ctags/bin:/ccs/home/lmd/apps/git/bin:/ccs/home/lmd/apps/ack/bin:/ccs/home/lmd/apps/tmux/bin:/ccs/home/lmd/apps/bash/bin:/ccs/home/lmd/apps/zsh/bin:/usr/local/bin:/usr/local/sbin:/ccs/home/lmd/apps/vim/bin:/sw/cave/tmux/1.7/centos5.8_gnu4.1.2/bin:/sw/cave/bash/4.2/centos5.8_gnu4.1.2/bin:/sw/cave/zsh/5.0.0/centos5.8_gnu4.1.2/bin:/sw/cave/vim/7.3/centos5.8_gnu4.1.2/bin:/ccs/home/lmd/Preferences/bin:/ccs/home/lmd/apps/tree/bin:/ccs/home/lmd/apps/ctags/bin:/ccs/home/lmd/apps/git/bin:/ccs/home/lmd/apps/ack/bin:/ccs/home/lmd/apps/tmux/bin:/ccs/home/lmd/apps/bash/bin:/ccs/home/lmd/apps/zsh/bin:/ccs/home/lmd/.gem/ruby/1.9.1/bin:/sw/xk6/ruby/1.9.3/sles11.1_gnu4.3.4/lib/ruby/gems/1.9.1/bin:/sw/xk6/ruby/1.9.3/sles11.1_gnu4.3.4/bin:/sw/xk6/git/1.8.2.1/sles11.1_gnu4.3.4/bin:/sw/xk6/altd/bin:/sw/xk6/bin:/sw/xk6/lustredu/1.2/sles11.1_gnu4.3.4/lustredu/bin:/opt/moab/default/bin:/opt/torque/default/bin:/opt/cray/eslogin/eswrap/1.0.15/bin:/opt/modules/3.2.6.6/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/public/bin:/opt/cray/bin
Configuring & installing scripts.
Reading configuration: installation/pp.py
error: package directory '/autofs/na4_sw/xk6/uvcdat/1/3/2/sles11/1_gnu4/7' does not exist
Your Python checked OK!
Running: /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/source/CMake/../installation/contrib.py
Version is: 1.3.3
Make Errors detected:
CMake Error at /sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2/build/CMake/cdat_python_install_step.cmake:27 (message):
Error in Python Install. 1
make[2]: *** [CDAT-prefix/src/CDAT-stamp/CDAT-install] Error 1
make[1]: *** [CMakeFiles/CDAT.dir/all] Error 2
make: *** [all] Error 2
doutriaux1
aashish24
Hello all,
I'm running into a strange issue building UV-CDAT on SLES 11.1. I've set my
CMAKE_INSTALL_PREFIXto/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2and while building at the[ 48%] Performing install step for 'CDAT'step the following error occurs:/sw/xk6/uvcdat/1.3.2/sles11.1_gnu4.7.2somehow is getting transformed to/autofs/na4_sw/xk6/uvcdat/1/3/2/sles11/1_gnu4/7. The root directory/swis a symlink to/autofs/na4_swso that is not an issue but the dots "." have become slashes "/". Any idea whats going on here?I've tried this in 1.3.1, 1.3.2 and 1.3.3 with the same results. I'm invoking cmake directly and specifying options on the command line:
I can provide the full compile output if that will help.