ANGULAR: Color nodes and links in phylogenetic tree view

[roxycintron]

Describe the bug Nodes and links are not colored when the 'Leaves' and 'Branches' color settings are selected. However, node and link colors display correctly in the 2D network.

To Reproduce Steps to reproduce the behavior:

1. Load fasta and node files and click Launch
2. Select 'Phylogenetic Tree' view
3. Click the Settings wheel and select the 'Leaves' tab
4. Select 'Show Colors' (the Global Settings open)
5. Select to 'Color Nodes By' Virus ID
6. Select to 'Color Links By' Distance
7. See error: nodes and links are not colored in the phylogenetic tree view

Node and link colors are working in 2D network

Desktop (please complete the following information):

• Laptop (Windows 10)
• Browser [Chrome]

[reagank]

This may actually be a shortcoming in the tree library, I'm not sure that it allows coloring nodes differently by variable. I don't think this is possible in the current version of MT, either. I'll remove the option for it from the settings UI.

[roxycintron]

Yes, nodes are colored in the 2D network and phylogenetic tree in classic MT. I don't think links are colored in trees though.

On Wednesday, November 16, 2022, Reagan Kelly @.***> wrote:

This may actually be a shortcoming in the tree library, I'm not sure that it allows coloring nodes differently by variable. I don't think this is possible in the current version of MT, either. I'll remove the option for it from the settings UI.

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