Open schorlton opened 10 months ago
Samtools depth now has the functionality to only count overlaps in paired-end reads once. The community seems to think this is a more correct calculation of depth: https://bioinformatics.stackexchange.com/questions/5427/double-counting-coverage-of-overlapped-read-pairs. This PR enables this capability.
depth
Samtools
depthnow has the functionality to only count overlaps in paired-end reads once. The community seems to think this is a more correct calculation of depth: https://bioinformatics.stackexchange.com/questions/5427/double-counting-coverage-of-overlapped-read-pairs. This PR enables this capability.