The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
The latest version of pyway, 0.3.30, is not able to read the existing migrations directory. Since these migrations are deprecated in favor of alembic, the easiest path forward is to pin pyway to version 0.3.29 until its removed from the project.
Within #19 we simplified the settings to use the new DB_URI env variable to define connection settings. We forgot to also update update postgres database setup in the GH testing workflow to follow this pattern.
Checklist
Please review and complete the following checklist before submitting your pull request:
[x] I have ensured that the pull request is of a manageable size, allowing it to be reviewed within a single session.
[x] I have reviewed my changes to ensure they are clear, concise, and well-documented.
[x] I have updated the documentation, if applicable.
[x] I have added or updated test cases to cover my changes, if applicable.
[x] I have minimized the number of reviewers to include only those essential for the review.
[x] I have notified teammates in the review thread to build awareness.
Checklist for Reviewers
Please review and complete the following checklist during the review process:
[ ] The code follows best practices and conventions.
[ ] The changes implement the desired functionality or fix the reported issue.
[ ] The tests cover the new changes and pass successfully.
[ ] Any potential edge cases or error scenarios have been considered.
Description
The latest version of pyway, 0.3.30, is not able to read the existing migrations directory. Since these migrations are deprecated in favor of alembic, the easiest path forward is to pin pyway to version 0.3.29 until its removed from the project.
Within #19 we simplified the settings to use the new DB_URI env variable to define connection settings. We forgot to also update update postgres database setup in the GH testing workflow to follow this pattern.
Checklist
Please review and complete the following checklist before submitting your pull request:
Checklist for Reviewers
Please review and complete the following checklist during the review process: