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CDCgov
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SARS-CoV-2_Sequencing
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
Apache License 2.0
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How do I cite the Utah DoH ARTIC/Illumina Bioinformatic Workflow (Erin Young/Kelly Oakeson)?
#41
fhsantanna
closed
2 years ago
3
epiToPublic update 2021-03-12
#40
AngieHinrichs
closed
3 years ago
2
epiToPublic update 2021-02-26
#39
AngieHinrichs
closed
3 years ago
0
Updated srr to gisaid table
#38
mshakya
closed
3 years ago
0
epiToPublic update 2021-02-12
#37
AngieHinrichs
closed
3 years ago
0
epiToPublic update 2021-01-29
#36
AngieHinrichs
closed
3 years ago
0
Sequencing laboratory
#35
GUHurley
closed
2 years ago
1
Update README.md
#34
erinyoung
closed
3 years ago
0
epiToPublic update 2021-01-15
#33
AngieHinrichs
closed
3 years ago
0
epiToPublic update 2021-01-01
#32
AngieHinrichs
closed
3 years ago
0
A tsv file that has gisaid ids mapped to srr ids
#31
mshakya
closed
3 years ago
1
IDseq to the list of resources.
#30
efahsbender1
closed
3 years ago
2
Update README.md added EzCOVID19
#29
nahasan
closed
4 years ago
0
Add a description of our MiCall project.
#28
donkirkby
closed
4 years ago
0
adding info related to LANL EDGE COVID-19 workflow
#27
mshakya
closed
4 years ago
0
Add link to Galaxy ARTIC page
#26
pvanheus
closed
4 years ago
0
Add AAU Illumina ARTIC protocol
#25
pvanheus
closed
4 years ago
1
Add OpenGene/fastv introduction to README
#24
sfchen
closed
4 years ago
0
Adding StaPH-B Materials
#23
kevinlibuit
closed
4 years ago
0
Add in BugSeq analysis to the bioinformatics section
#22
schorlton
closed
4 years ago
0
Apache-2.0-or-later
#21
TechnologyClassroom
closed
4 years ago
0
Missing LICENSE
#20
TechnologyClassroom
closed
4 years ago
2
Update CDC boilerplate with most recent changes
#19
leebrian
closed
4 years ago
1
updated readme
#18
jonathanjacobs
closed
4 years ago
2
Adding UCSC genome browser link to README
#17
maximilianh
closed
4 years ago
0
CLC plugin
#16
p-dekker
closed
4 years ago
1
include direct RNA nanopore sequencing resource?
#15
enovoa
closed
4 years ago
1
Resolves #12
#14
embatty
closed
4 years ago
0
Updated CLC Workflows for CDC protocols
#13
jonathanjacobs
closed
4 years ago
2
Updated ONT protocol
#12
embatty
closed
4 years ago
1
CLC workflow for CDC NCIRD/DVD ONT & Illumina NEBNext Sequencing Protocol
#11
jonathanjacobs
closed
4 years ago
1
Updated vcf_mask_lowcoverage.pl to strip windows line endings.
#10
donutbrew
closed
4 years ago
0
Regarding oxford nanopore data analysis
#9
ps120195
closed
4 years ago
25
Broken link in document (NCBI-Sequence_submission_for_COVID-19.pdf)
#8
marcoxa
closed
4 years ago
2
Initial push of CDC sequencing protocols
#7
donutbrew
closed
4 years ago
0
Updating readme text formatting
#6
erinyoung
closed
4 years ago
0
Add Galaxy to Bioinformatics Tools section
#5
tnabtaf
closed
4 years ago
0
Update QIAGEN / CLC verbiage
#4
jonathanjacobs
closed
4 years ago
1
Great initiative!
#3
Kirk3gaard
closed
4 years ago
1
Add SARS-CoV-2 and related virus probe set from Broad Institute
#2
haydenm
closed
4 years ago
0
Added Genome Detective Virus tool
#1
emweb
closed
4 years ago
0
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