The ABCtools package currently has no testing to ensure changes do not impact package performance. We require at least one verification test that automatically verifies a simple calibration still works
Changes
The PR introduces a single workflow test_toy_model.yaml that install poetry, uses the poetry instance to set up the python environment and cache the dependencies, and then run a test pipeline that uses the toy SIR model in the main package. Briefly, the test asserts that the results of ABC-SMC calibration were written correctly
Requests
This PR should be approved despite pre-commit test failure if test_toy_model returns a success. Changes suggested by pre-commit will have to be made after this workflow is used to ensure the changes still allow code to function
Overview
The ABCtools package currently has no testing to ensure changes do not impact package performance. We require at least one verification test that automatically verifies a simple calibration still works
Changes
The PR introduces a single workflow
test_toy_model.yamlthat install poetry, uses the poetry instance to set up the python environment and cache the dependencies, and then run a test pipeline that uses the toy SIR model in the main package. Briefly, the test asserts that the results of ABC-SMC calibration were written correctlyRequests
This PR should be approved despite pre-commit test failure if test_toy_model returns a success. Changes suggested by pre-commit will have to be made after this workflow is used to ensure the changes still allow code to function