Meta: v0.3.0 - Githubissues

CDCgov / cfa-gam-rt

R package for real-time Rt estimation with penalized splines

https://cdcgov.github.io/cfa-gam-rt/

Apache License 2.0

13 stars 1 forks source link

Meta: v0.3.0 #4

Open zsusswein opened 5 months ago

zsusswein commented 5 months ago

Goal

Take the features from the v0.2.0 release, clean up any rough edges, and add in additional features needed for real-time use-cases.

Features

[ ] Data simulator: delay process
[ ] Data simulator: right-truncation
[ ] Full methods readme
[ ] Right-truncation correction (chain-binomial?)
[ ] Auto-switch to MH sampler for small values
[ ] Benchmark performance
[ ] #21
[ ] Perhaps allow marking importation?
[ ] LFO-CV?
[x] #40

seabbs commented 5 months ago

Right-truncation correction

I really liked Chris's approach here to estimate the delay elsewhere and then use it as an offset. I think the slightly better version is to still also fit a non-parametric delay to allow it to slightly vary etc but it seems like a really nice way of enforcing a bit of mechanism into these very flexible models.