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CDCgov / phoenix

🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
https://www.cdc.gov/ncezid/divisions-offices/about-dhqp.html
Apache License 2.0
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[BUG] - create_samplesheet.sh file is no longer available #170

Open snallani-msdh opened 6 months ago

snallani-msdh commented 6 months ago

Describe the bug The "create_samplesheet.sh" file that was previously found in the bin folder is no longer present.

Impact We were using this file to automate samplesheet creation and now cannot. Not sure if this is an intended change when the latest update was made so I wanted to bring it to your attention.

jvhagey commented 6 months ago

Whoops, I think it was removed as it wasn't actively being used in the larger pipeline. I can add it back in the next version. However, you can make a copy of this to keep on your system. Let me know if that works for you.