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CDCgov
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phoenix
🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
https://www.cdc.gov/ncezid/divisions-offices/about-dhqp.html
Apache License 2.0
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v2.0.1
#112
jvhagey
closed
1 year ago
0
v2.0.0
#111
jvhagey
closed
1 year ago
2
Revert "Read pair comparison"
#109
MzDiaz824
closed
1 year ago
0
Read pair comparison
#108
MzDiaz824
closed
1 year ago
0
Rd pr compr
#107
MzDiaz824
closed
1 year ago
0
MLST_Check_error
#106
fnindo
closed
1 year ago
6
amd platform branch merged into v1.2.0-dev
#105
jvhagey
closed
1 year ago
0
Merge pull request #103 from CDCgov/v1.1.1
#104
jvhagey
closed
1 year ago
0
v1.1.1
#103
jvhagey
closed
1 year ago
0
[BUG] - check mlst failure
#102
erinyoung
closed
1 year ago
1
[BUG] - calculate assembly ratio error
#101
erinyoung
closed
1 year ago
2
[BUG] - input filename collision
#100
erinyoung
closed
1 year ago
1
[BUG] - Missing AMR genes in final output
#99
johnsonj161
closed
1 year ago
4
BBDUK
#98
slsevilla
closed
1 year ago
6
Add FAIry to changelog
#97
MzDiaz824
closed
1 year ago
0
Fairy 2
#96
MzDiaz824
closed
1 year ago
0
add new phoenix qc entrypoint
#93
rpetit3
opened
1 year ago
2
v1.1.0 to main
#92
jvhagey
closed
1 year ago
0
[BUG] - CHECK_MLST failure
#91
johnsonj161
closed
1 year ago
3
Fairy improvements
#90
MzDiaz824
closed
1 year ago
0
Fairy improvements
#89
MzDiaz824
closed
1 year ago
0
Create fairy.nf
#88
MzDiaz824
closed
1 year ago
0
Singe-end analysis - requested enhancement
#87
AroobAlhumaidy
opened
1 year ago
1
the singularity issues that we have to use locally pulled containers.
#86
ybdong919
closed
1 year ago
7
SPAdes cp: cannot create regular file
#85
Siddra2021
closed
1 year ago
5
add defaultBranch
#84
erinyoung
closed
1 year ago
0
add new phoenix qc entrypoint
#83
rpetit3
closed
1 year ago
0
SPAdes fails
#82
johnsonj161
closed
1 year ago
5
[New Feature Request] - Move all params out of config files into nf files
#81
erinyoung
closed
1 year ago
4
*_summaryline.tsv columns do not match the descriptions in the wiki
#80
johnsonj161
closed
1 year ago
6
[BUG] - CUSTOM_DUMPSOFTWAREVERSIONS
#79
slsevilla
closed
1 year ago
4
Terminated with an error exit status 127
#78
Siddra2021
closed
1 year ago
16
update best hits channel
#77
MzDiaz824
closed
1 year ago
0
update wf scaffolds
#76
MzDiaz824
closed
1 year ago
0
Diaz scaff
#75
MzDiaz824
closed
1 year ago
0
Update base.config
#74
MzDiaz824
closed
2 years ago
0
correct suffix
#73
MzDiaz824
closed
2 years ago
0
fix out versions
#72
MzDiaz824
closed
2 years ago
0
correct process
#71
MzDiaz824
closed
2 years ago
0
close quotes
#70
MzDiaz824
closed
2 years ago
0
remove container correct output
#69
MzDiaz824
closed
2 years ago
0
remove unecc modules and subworkflows
#68
MzDiaz824
closed
2 years ago
0
Scaffolds
#67
MzDiaz824
closed
2 years ago
0
Correct module used for entry
#66
MzDiaz824
closed
2 years ago
0
Scaffolds
#65
MzDiaz824
closed
2 years ago
0
Scaffolds
#64
MzDiaz824
closed
2 years ago
0
Scaffolds
#63
MzDiaz824
closed
2 years ago
0
Update main.nf
#62
MzDiaz824
closed
2 years ago
0
Scaffolds
#61
MzDiaz824
closed
2 years ago
0
Scaffolds workflow updates
#60
MzDiaz824
closed
2 years ago
0
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