What is the Bug Related To? Please Provide a Description.
Place an :x: in a Box that Best Matches the Bug's Importance:
[] 1 - Most severe (a full-break in core function)
[] 2-4 - Moderate (break for a particular aspect/feature) (how integral is the broken feature?)
[x] 5 - Least severe (non-functional issue, such as inconsitency / error in documentation or administrative in nature)
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OS: [e.g. iOS]:
Browser [e.g. chrome, safari]:
Version [e.g. 22]:
Run environment (container, cloud service, HPC, platform, etc.):
Please Outline Necessary Steps to Replicate Bug (Go to.. Click on... Install the following... etc.):
Running with --workflow denovo (and perhaps others) does not correctly capture the contig count in sample_summary.tsv. Suspect this is an error with parsing quast output -- perhaps by summarize_qc.py -- because values are present in /quast/report.tsv.
Any Additional Context or Information? Has There Been Any Progress Made So Far Towards this Request? Any Concrete Instructions to Resolve the Bug or Helpful Resources to Reference? Screenshots or Logs?
What is the Bug Related To? Please Provide a Description.
Place an :x: in a Box that Best Matches the Bug's Importance:
Please Complete the Following Information:
Run environment (container, cloud service, HPC, platform, etc.):
Please Outline Necessary Steps to Replicate Bug (Go to.. Click on... Install the following... etc.):
Running with
--workflow denovo(and perhaps others) does not correctly capture the contig count insample_summary.tsv. Suspect this is an error with parsing quast output -- perhaps bysummarize_qc.py-- because values are present in/quast/report.tsv.Any Additional Context or Information? Has There Been Any Progress Made So Far Towards this Request? Any Concrete Instructions to Resolve the Bug or Helpful Resources to Reference? Screenshots or Logs?