14249 add fhir inventory java class

[jack-h-wang]

This PR adds a HL7 message class that covers RS (ORU-R01) relevant data elements from the FHIR mapping inventory and updates catchall mappings to cover the additions.

Test Steps:

1. Verify the class updates match the FHIR mapping inventory.

Changes

• Add HL7 message class based on FHIR mapping inventory (replaces RADx MARS message class)
• Change HL7Reader to use the new message class.
• Update mappings and tests for NTE, OBR, OBX, and ORC segments.

Checklist

Testing

• [x] Tested locally?
• [x] Ran ./prime test or ./gradlew testSmoke against local Docker ReportStream container?
• [x] Added tests?

Linked Issues

• 14249

To Be Done

• 14569

• 14343

[github-actions[bot]]

Dependency Review

✅ No vulnerabilities or license issues or OpenSSF Scorecard issues found.

OpenSSF Scorecard

Package	Version	Score	Details

Scanned Manifest Files

[github-actions[bot]]

Test Results

1 200 tests  ±0   1 196 :white_check_mark: ±0   6m 43s :stopwatch: +7s   152 suites ±0       4 :zzz: ±0    152 files   ±0       0 :x: ±0 

Results for commit 805db0b8. ± Comparison against base commit 6e1475e5.

:recycle: This comment has been updated with latest results.

[github-actions[bot]]

Integration Test Results

 62 files   62 suites   34m 17s :stopwatch: 395 tests 385 :white_check_mark: 10 :zzz: 0 :x: 398 runs  388 :white_check_mark: 10 :zzz: 0 :x:

Results for commit 805db0b8.

:recycle: This comment has been updated with latest results.

[sonarcloud[bot]]

Quality Gate failed

Failed conditions
19.0% Coverage on New Code (required ≥ 80%)
46.4% Duplication on New Code (required ≤ 3%)
B Maintainability Rating on New Code (required ≥ A)

See analysis details on SonarCloud

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