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CDCgov
/
seqsender
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
https://cdcgov.github.io/seqsender/
Apache License 2.0
32
stars
10
forks
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Dockerfile update
#90
dthoward96
closed
5 days ago
0
Documentation and Docker updates
#89
dthoward96
closed
5 days ago
0
[FEATURE REQUEST] Adding Pathoplexus to the options
#88
peterwc-cdc
opened
5 days ago
0
update pages
#87
dthoward96
closed
1 week ago
0
Dev
#86
dthoward96
closed
1 week ago
0
V1.2.3 Update
#85
dthoward96
closed
1 week ago
0
GitHub action test (#83)
#84
dthoward96
closed
1 week ago
0
GitHub action test
#83
dthoward96
closed
1 week ago
0
V1.2.2 Update
#82
dthoward96
closed
1 week ago
0
update dev
#81
dthoward96
closed
1 week ago
0
Add support for new GISAID EpiFlu fields
#80
nbx0
closed
1 week ago
1
Update issue templates
#79
dthoward96
closed
2 weeks ago
0
V1.2.1 documentation fixes
#78
dthoward96
closed
2 weeks ago
0
v1.2.1 documentation typos fixes
#77
dthoward96
closed
2 weeks ago
0
Merge pull request #72 from CDCgov/dev
#76
dthoward96
closed
2 weeks ago
0
Add docs to readme and doc site about container location and availability
#74
leebrian
opened
3 weeks ago
0
Update gh pages
#73
dthoward96
closed
3 weeks ago
0
Dev Update Readme
#72
dthoward96
closed
3 weeks ago
0
Update dev to v1.2.1
#71
dthoward96
closed
3 weeks ago
0
Dthoward96 remove cli
#70
dthoward96
closed
3 weeks ago
0
V1.2.1. Release
#69
dthoward96
closed
3 weeks ago
0
Update issue templates (#66)
#68
dthoward96
closed
3 weeks ago
0
V1.2.1 Update
#67
dthoward96
closed
3 weeks ago
0
Update issue templates
#66
dthoward96
closed
4 weeks ago
0
Shiny app template errors
#65
erikwolfsohn
closed
3 weeks ago
1
GISAID covCLI bugfixes & BioSample/SRA modifications
#64
erikwolfsohn
closed
3 weeks ago
1
Update README.md
#63
dthoward96
closed
1 month ago
0
Update README.md (#61)
#62
dthoward96
closed
1 month ago
0
Update README.md
#61
dthoward96
closed
1 month ago
0
V1.2.0 Prod Update
#60
dthoward96
closed
1 month ago
0
Update Dev to v1.2.0
#59
dthoward96
closed
1 month ago
0
V1.2.0 Update
#58
dthoward96
closed
1 month ago
0
Table2asn bug fixes
#57
dthoward96
closed
4 months ago
0
Bug fix create.py
#56
dthoward96
closed
4 months ago
0
bug fix fasta file creation
#55
dthoward96
closed
5 months ago
0
Bug fix for gisaid name overwriting genbank name for fasta file (#53)
#54
dthoward96
closed
5 months ago
0
Bug fix for gisaid name overwriting genbank name for fasta file
#53
dthoward96
closed
5 months ago
0
Add bug fixes from master to v1.2.0
#52
dthoward96
closed
5 months ago
1
Bug fix process.py
#51
dthoward96
closed
6 months ago
0
create.py duplicate strain name bug
#50
dthoward96
closed
6 months ago
0
add either or for strain/isolate
#49
dthoward96
closed
6 months ago
0
can't check status
#48
SeanSierra-Patev
closed
1 month ago
1
There is no submission directory at /home/user1/FLU_reporting
#47
SeanSierra-Patev
closed
6 months ago
1
User defined date specificity
#46
mikeyweigand
closed
1 month ago
2
Dthoward96 bugfix
#45
dthoward96
closed
6 months ago
0
Create dockerhub_upload.yml
#44
dthoward96
closed
1 week ago
1
automatic biosample package validation
#43
dthoward96
closed
1 month ago
0
Dthoward96 org id patch
#42
dthoward96
closed
6 months ago
0
Create docker_test_build.yml
#41
dthoward96
closed
6 months ago
0
xml submissions to NCBI do not require 'org_id'
#40
mikeyweigand
closed
6 months ago
1
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