Closed SeanSierra-Patev closed 5 months ago
This may be an extremely simple question, I'm probably overlooking something to do with docker, but I'm trying a test submission via Docker, the command (and response) being
`docker exec -it seqsender bash seqsender-kickoff submit --organism FLU -bsn --submission_dir /home/user1/FLU_reporting/ --submission_name test_sub --config_file config.yaml --metadata_file metadata.csv --fasta_file RI-M04353-2024013.fasta --test
There is no submission directory at /home/user1/FLU_reporting `
the path is correct, my submission folder "test_sub" is indeed at /home/user1/FLU_reporting/
I'm at a loss
Oh nevermind, it was an issue with how I was invoking docker to begin with
This may be an extremely simple question, I'm probably overlooking something to do with docker, but I'm trying a test submission via Docker, the command (and response) being
`docker exec -it seqsender bash seqsender-kickoff submit --organism FLU -bsn --submission_dir /home/user1/FLU_reporting/ --submission_name test_sub --config_file config.yaml --metadata_file metadata.csv --fasta_file RI-M04353-2024013.fasta --test
There is no submission directory at /home/user1/FLU_reporting `
the path is correct, my submission folder "test_sub" is indeed at /home/user1/FLU_reporting/
I'm at a loss