CDCgov / tostadas

🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
https://cdcgov.github.io/tostadas/
Apache License 2.0
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[Internal] [Feature] Add Table2asn to Container #111

Closed ankushkgupta2 closed 7 months ago

ankushkgupta2 commented 9 months ago

What is the Feature Related To? Please Provide a Description. Create a bash shell script that can be executed by the user to pull latest version of table2asn and change permissions for it to be accessible.

Add to README.md that this option exists for users.

Put more information on the different formatting options/args (already located within submission config) for table2asn command (potentially make certain arguments dynamic, for example, if more than one .fasta file is passed in, etc.).

Place an :x: in a Box that Best Matches the Feature's Importance:

Any Additional Context or Information? Has There Been Any Progress Made So Far Towards this Request? Any Helpful Resources to Reference? Screenshots or Links? N/A

kyleoconnell commented 8 months ago

Can also see if we can split this to a separate process and use the table2asn container

kyleoconnell commented 7 months ago

Included in SeqSender code now.