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CDCgov / wastewater-informed-covid-forecasting

Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
https://cdcgov.github.io/wastewater-informed-covid-forecasting/
Apache License 2.0
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165 growth rate comparisons #167

Closed kaitejohnson closed 2 months ago

kaitejohnson commented 2 months ago

Figures comparing the growth rate of wastewater data and hospital admissions data using data interpolation and calculation of weekly or daily growth rate. Here I am defaulting to saving weekly as a part of the post-process pipeline.

See for example https://github.com/cdcent/cfa-forecast-renewal-ww/issues/771

kaitejohnson commented 2 months ago

Very neat. Just a couple things.

I'm kind of interested in the difference between the growth rates, but that involves a time shift due to different delays.

I was wondering if you think it makes sense to do something more quantitative with this e.g. find the R-squared across a range of lags (e.g. 1-15 days?)

SamuelBrand1 commented 2 months ago

Very neat. Just a couple things. I'm kind of interested in the difference between the growth rates, but that involves a time shift due to different delays.

I was wondering if you think it makes sense to do something more quantitative with this e.g. find the R-squared across a range of lags (e.g. 1-15 days?)

Yeah, that would be a good idea, but I'm happy to kill this PR off as one that builds some functions. Maybe put a follow up issues or a multi-step analysis plan issue.