This PR is a catch-all for a bunch of additional analyses and changes made to the azure pipeline and targets pipeline to facilitate the final results and supplementary figures for the analysis. At a high level this includes:
adding failure modes for fit and post process in azure pipeline (so jobs don't fail if data is missing or incomplete)
excluding the manual replacement with hospital admissions only model only in the Hub comparison analysis (not in retrospective analysis)
additional summary tables/supplemental figures/analyses necessary when writing the results
This PR is a catch-all for a bunch of additional analyses and changes made to the azure pipeline and targets pipeline to facilitate the final results and supplementary figures for the analysis. At a high level this includes: