Add an example of a pipeline with a config

CDCgov / ww-inference-model

An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations

https://cdcgov.github.io/ww-inference-model/

Apache License 2.0

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Add an example of a pipeline with a config #32

Open kaitejohnson opened 3 months ago

kaitejohnson commented 3 months ago

Goal

We want to show an example of how someone would use this package in a production pipeline.

Requirements

[ ] a script that can be called from the command line with parsed args getting passed
[ ] an example config file containing those parsed args
[ ] a pre-processing script/set of functions from a common input dataset example
[ ] a post-processing script/set of functions

kaitejohnson commented 2 months ago

It should follow this schema but modified for this package https://github.com/CDCgov/cfa-epinow2-pipeline/pull/7/files