Recent change of do.typing to set.atom.types will break downstream packages. To be consistent with R's deprecation functionality we need to register the old function and allow it to pass forward to the new function. Here, I crib the deprecation function file from phyloseq which follows the Bioconductor Deprecation docs here.
The is PR also updates the docs of a few functions.
Recent change of
do.typingtoset.atom.typeswill break downstream packages. To be consistent with R's deprecation functionality we need to register the old function and allow it to pass forward to the new function. Here, I crib the deprecation function file from phyloseq which follows the Bioconductor Deprecation docs here.The is PR also updates the docs of a few functions.