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CDK-R / cdkr

Integrating R and the CDK
https://cdk-r.github.io/cdkr/
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rcdkjar fails to compile with CDK nightly, missing IsotopeFactory #18

Closed sneumann closed 10 years ago

sneumann commented 10 years ago

Hi, I am trying to compile with an updated cdk.jar. While it works with the included cdk-1.5.2, it does not work with the download of cdk-1.5.5.ar from sf.net nor the nightly. This is with javac 1.7.0_51 on Linux.

    [javac] /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/util/Misc.java:188: error: cannot find symbol
    [javac]             IsotopeFactory ifac = IsotopeFactory.getInstance(DefaultChemObjectBuilder.getInstance());
sneumann commented 10 years ago

Same problem with stock cdk-1.5.2 downloaded from sf.net, and same with openjdk-6-jdk-6b27 All in all, the rcdkjar/jars/cdk-1.5.2.git.jar has ~2000 files more in it than the sf.net download. Full trace is in http://pastebin.com/T5M2aUjs Is there anything special I need to do to update rcdklibs to nightly ? Yours, Steffen

rajarshi commented 10 years ago

Hmm, did you do a git pull for the whole cdkr repo? the cdk jar in rcdkjar/jars should be

cdk-1.5.5.git.jar

On Fri, Feb 21, 2014 at 6:47 AM, sneumann notifications@github.com wrote:

Same problem with stock cdk-1.5.2 downloaded from sf.net, and same with openjdk-6-jdk-6b27 All in all, the rcdkjar/jars/cdk-1.5.2.git.jar has ~2000 files more in it than the sf.net download. Full trace is in http://pastebin.com/T5M2aUjs Is there anything special I need to do to update rcdklibs to nightly ? Yours, Steffen

Reply to this email directly or view it on GitHubhttps://github.com/rajarshi/cdkr/issues/18#issuecomment-35724067 .

Rajarshi Guha | http://blog.rguha.net NIH Center for Advancing Translational Science

sneumann commented 10 years ago

Most likely a problem on my side. Since #15 is now closed anyway, this is moot. Sorry for the noise, Steffen