Closed schymane closed 5 years ago
rajarshi
commented
6 years ago I think this has to do with the SNAPSHOT version of CDK I built for the update. When the formula stuff gets resolved I'll be updating rcdklibs and rcdk to have a clean JAR file
schymane
commented
6 years ago Thought/hoped this might be a transient issue; the install happened by default while I was testing. Looking forward to trying out the formula changes, thanks in advance ;)
rajarshi
commented
5 years ago Latest master resolves this
I'm getting a lot of output trying a fresh install of rcdk_v3.4.8 from github that seems to persist for all subsequent installations as well (and also appears for rcdk_libs)
*** arch - x64 0 [main] DEBUG org.openscience.cdk.DynamicFactory - registered 'IAtom' with 'Atom' implementation 15 [main] DEBUG org.openscience.cdk.DynamicFactory - registered 'IPseudoAtom' with 'PseudoAtom' implementation [... another 38 or so lines ... you get the picture ]
Then ...
Is there a way to make it quiet? :-) Thanks!
R version 3.4.2 (2017-09-28) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale: [1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252 LC_MONETARY=English_Australia.1252 [4] LC_NUMERIC=C LC_TIME=English_Australia.1252
attached base packages: [1] grid stats graphics grDevices utils datasets methods base
other attached packages: [1] ReSOLUTION_0.1.5 nontarget_1.9 mgcv_1.8-20 nlme_3.1-131 nontargetData_1.1 [6] mzR_2.10.0 readxl_1.1.0 OrgMassSpecR_0.5-3 RChemMass_0.1.12 enviPat_2.2
[11] rsvg_1.2 curl_3.2 rcdk_3.4.8 rcdklibs_2.2 rJava_0.9-9
[16] RMassBank_2.4.0 Rcpp_0.12.13 devtools_1.13.3
loaded via a namespace (and not attached): [1] lattice_0.20-35 colorspace_1.3-2 stats4_3.4.2 fingerprint_3.5.7
[5] yaml_2.1.14 vsn_3.44.0 XML_3.98-1.9 rlang_0.1.2
[9] withr_2.0.0 MSnbase_2.2.0 BiocParallel_1.10.1 affy_1.54.0
[13] BiocGenerics_0.22.1 affyio_1.46.0 foreach_1.4.3 plyr_1.8.4
[17] mzID_1.14.0 ProtGenerics_1.8.0 zlibbioc_1.22.0 cellranger_1.1.0
[21] munsell_0.4.3 pcaMethods_1.68.0 gtable_0.2.0 codetools_0.2-15
[25] memoise_1.1.0 Biobase_2.36.2 knitr_1.17 IRanges_2.10.5
[29] doParallel_1.0.11 BiocInstaller_1.26.1 parallel_3.4.2 itertools_0.1-3
[33] preprocessCore_1.38.1 scales_0.5.0 limma_3.32.10 S4Vectors_0.14.7
[37] impute_1.50.1 rjson_0.2.15 ggplot2_2.2.1 png_0.1-7
[41] digest_0.6.12 tools_3.4.2 bitops_1.0-6 lazyeval_0.2.0
[45] RCurl_1.95-4.8 tibble_1.3.4 Matrix_1.2-11 httr_1.3.1
[49] iterators_1.0.9 R6_2.2.2 MALDIquant_1.16.4 git2r_0.19.0
[53] compiler_3.4.2