[BUG]: Conda and Mamba profiles broken in 3.3.0 - Githubissues

CFIA-NCFAD / nf-flu

Influenza genome analysis Nextflow workflow

MIT License

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[BUG]: Conda and Mamba profiles broken in 3.3.0 #35

Closed peterk87 closed 1 year ago

peterk87 commented 1 year ago

Is there an existing issue for this?

[X] I have searched the existing issues

Description of the Bug/Issue

Conda/Mamba process envs not being created.

Nextflow command-line

nextflow run CFIA-NCFAD/nf-flu -r 3.3.0 -profile <conda/mamba> ...

Error Message

"IRMA" (and other process tools) command not found

Workflow Version

3.3.0

Nextflow Executor

local

Nextflow Version

22.04.5, build 5708 (15-07-2022 16:09 UTC)

Java Version

No response

Hardware

desktop

Operating System (OS)

No response

Conda/Container Engine

Conda

Additional context

No response

peterk87 commented 1 year ago

Fixed in #36 and released in 3.3.1