Could not open File 'aux'

CFeregrino / scWGCNA

scWGCNA

GNU General Public License v3.0

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Could not open File 'aux' #19

Open GCS-ZHN opened 2 years ago

GCS-ZHN commented 2 years ago

When I try to execute run.scWGCNA, An error as title ocurred. I traceback the error and found that "aux" is a special media device name for windows 10/11 and can't be reused by users. So I forked this repository and changed sink("aux") to sink(".aux"), and then I was able to run test samples properly. My mainly concern is following:

it's OK to do this?
What's meaning of sink("aux") for run.scWGCNA api?
It's a necessary step?

Thank you for developing this package.

snowluckyheart commented 2 years ago

hello,bro I have met the same problem. I removed sink("aux") in run.scWGCNA function. And I can run test samples. Is this correct?

CFeregrino commented 2 years ago

Hello all, sorry that I'm taking a while to answer these. It seems like some legacy from back in the day when I was running the code as an r markdown and I didn't want some output to be directed at the default. I don't have much time to do tests, but I'll remove it in the meanwhile and see if no one complaints :P Thank you both for the heads up!!!!