currently the downloadDistiLD function separately downloads the two annotation files for GWAS SNPs and HapMap LD blocks with assigned SNPs and gene annotations. The function uses the log file as the outfile. The next function, buildDistiLDTracks then snips off the log file suffix to separately convert the SNP file and LD block file. The multiple files should be handled by ruffus and allow the explicit passing of multiple input files to buildDistiLDTracks.
MikeDMorgan
commented
7 years ago
currently the
downloadDistiLDfunction separately downloads the two annotation files for GWAS SNPs and HapMap LD blocks with assigned SNPs and gene annotations. The function uses the log file as theoutfile. The next function,buildDistiLDTracksthen snips off the log file suffix to separately convert the SNP file and LD block file. The multiple files should be handled by ruffus and allow the explicit passing of multiple input files tobuildDistiLDTracks.