Logging broken (python version issue?)

CGATOxford / UMI-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

MIT License

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Closed IanSudbery closed 8 months ago

IanSudbery commented 3 years ago

Running any command with log and stdout going to the same stream causes

OSError: [Errno 9] Bad file descriptor

Is it possible something has called close() on whatever is recieving the stdout?

TomSmithCGAT commented 8 months ago

@IanSudbery - Did you work out what's going on here?

IanSudbery commented 8 months ago

Must have done because its not longer a problem. However, we do get on unsightly error if you try to log to a gz file.