Closed anoronh4 closed 1 year ago
is it required that the bam be sorted by coordinate before running umitools dedup?
Yes. Sorted and indexed. See https://umi-tools.readthedocs.io/en/latest/QUICK_START.html?highlight=sort#step-4-mapping for examples samtools commands
samtools
is it required that the bam be sorted by coordinate before running umitools dedup?