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CGATOxford / UMI-tools

Tools for handling Unique Molecular Identifiers in NGS data sets
MIT License
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Collapse barcode to generate whitelist based on frequency #619

Closed ashokpatowary closed 11 months ago

ashokpatowary commented 11 months ago

I have barcode frequency in the following format from single cell long read data. What will be the best way to generate an error corrected white list from this data. @IanSudbery has suggested in one post to use getCellWhitelist but I failed to do it. Would you suggest how can I do it? Thanks

  13574 ATGCTAACCTACCGTAATC
  12244 ATGCTAACCTAGGCATCTT
   8185 CCTTGGCTCTATGGCGCTT
   8135 ATGCTAACCTAAACGTTGC
   7340 ATGCTAACCTATGACCGGA
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      1 AAAAAAAAAAACATCGTTC
      1 AAAAAAAAAAACAGCGAAC
      1 AAAAAAAAAAACAGAACGA
      1 AAAAAAAAAAAAGGCTCTA
      1 AAAAAAAAAAAACTACGCA