Open eachanjohnson opened 3 weeks ago
Thank you for catching this @eachanjohnson! That'll teach me for rushing through a random blog post to remind myself how to upload packages to pypi 🤦
As suggested in the blog, I ran python setup.py bdist_wheel
, when I should of run python setup.py sdist
, hence the lack of source code in the upload. That's been rectified now.
I did note previously that bioconda didn't immediately update umi_tools, but figured I was just being too impatient and forgot to check back. Previously, the bioconda bot picked it up fairly quickly (within a few hours if I remember right). I'll check again tomorrow whether uploading the source is sufficient to get the bot to pick it up. If not, I'll make a manual PR. I'll leave this open until bioconda has the latest version too.
I have a GitHub action for uploading to pypi when a release is made. I could make a PR perhaps tomorrow to include it if helpful.
That would be really useful, thank you 🙏
I looked into using a Github action for automating the uploading, but I can't remember where I got stuck. Don't see any reason why a generic action shouldn't work perfectly fine here.
Describe the bug I could not install the latest v1.1.6 release on Linux using either
conda install umi_tools=1/1/6
orpip install umi_tools==1.1.6
. Installing from GitHub works withpip install git+https://github.com/CGATOxford/UMI-tools@v1.1.6
.To Reproduce Try
conda install umi_tools=1.1.6
.Expected behavior To be able to install the v1.1.6 release.
Environment
Additional context It looks like 1.1.6 isn't on the conda index at all, and only pre-built MacOS binaries and no source are available on pypi.
Additional context: thanks so much for continuing to maintain this great suite of tools! 🙇