Usage for Batch mode script

CHRF-Genomics / Paratype

Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.

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Usage for Batch mode script #2

Open jacquikeane opened 2 years ago

jacquikeane commented 2 years ago

It would be great if this script checked for the correct number of input arguments and printed a usage if 3 arguments not provided. Happy make the edits and send a pull request?

arif-tanmoy commented 1 year ago

Hi @jacquikeane - We've added a detailed bash script for batch runs in version 1.1. Please check this version. Thank you.