I wrote a program that can output an APE file and a simple text file of the DNA sequence. The program uses the Eugene file and part order from dpl_dna_designs.csv to generate the DNA sequence. Currently, I only have the program adding the sequence to the Eco1C1G1T1.UCF.json base sequences. To work the program, the python file must be in the output directory or the folder above. I put each of my Cello runs into a separate folder in the output directory. The program then goes through each folder and subfolder, and if the appropriate files exist, it creates the circuit and output DNA in both the APE format and a .txt format. It also creates a file that holds a log of the command prompt.
DNA_txt.zip
I wrote a program that can output an APE file and a simple text file of the DNA sequence. The program uses the Eugene file and part order from dpl_dna_designs.csv to generate the DNA sequence. Currently, I only have the program adding the sequence to the Eco1C1G1T1.UCF.json base sequences. To work the program, the python file must be in the output directory or the folder above. I put each of my Cello runs into a separate folder in the output directory. The program then goes through each folder and subfolder, and if the appropriate files exist, it creates the circuit and output DNA in both the APE format and a .txt format. It also creates a file that holds a log of the command prompt. DNA_txt.zip