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CIDARLAB / cello

Genetic circuit design automation
http://www.cellocad.org/
BSD 2-Clause "Simplified" License
801 stars 133 forks source link

Compilation Error #62

Open gustavoquincy opened 11 months ago

gustavoquincy commented 11 months ago

Hello there,

I'm trying to compile Cello with Red Hat Enterprise Linux on AWS EC2. The dependency is first installed following INSTALL.md.

sudo yum groupinstall "Development tools"
sudo yum install git
sudo yum install gnuplot
sudo yum install ghostscript
sudo yum install graphviz
sudo yum install python-matplotlib
sudo yum install ImageMagick
sudo yum install /lib/libgcc_s.so.1
sudo yum install ld-linux.so.2

sudo yum install wget
wget https://download.oracle.com/java/17/latest/jdk-17_linux-x64_bin.tar.gz
tar zxvf jdk-17_linux-x64_bin.tar.gz
rm jdk-17_linux-x64_bin.tar.gz
export JAVA_HOME=/home/ec2-user/jdk-17.0.8/

wget https://dlcdn.apache.org/maven/maven-3/3.9.4/binaries/apache-maven-3.9.4-bin.tar.gz
tar xzvf apache-maven-3.9.4-bin.tar.gz
export PATH=/home/ec2-user/apache-maven-3.9.4/bin:$PATH

git clone https://github.com/CIDARLAB/cello
cd ~/cello/resources/library
bash install_local_jars.sh
cd ~/cello/

Then I ran mvn clean compile and encountered this error.

[INFO] Changes detected - recompiling the module!
[INFO] Compiling 168 source files to /home/ec2-user/cello/target/classes
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  22.842 s
[INFO] Finished at: 2023-08-21T03:10:34Z
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile (default-compile) on project cellocad: Fatal error compiling: java.lang.IllegalAccessError: class lombok.javac.apt.Processor (in unnamed module @0x691aaaa0) cannot access class com.sun.tools.javac.processing.JavacProcessingEnvironment (in module jdk.compiler) because module jdk.compiler does not export com.sun.tools.javac.processing to unnamed module @0x691aaaa0 -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException

I'm new to JDK/JRE and I wonder if other people have encountered the likes, and hopefully this could be resolved.