Parse reverse complement

CIDARLAB / knox

Full stack application for creating, combining, and storing combinatorial genetic design spaces.

BSD 3-Clause "New" or "Revised" License

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Parse reverse complement #16

Closed dany-fu closed 5 years ago

dany-fu commented 5 years ago

Edge orientation information was previously not being included in the API, and therefore, not passed to the UI. This PR parses SBOL SequenceAnnotation for orientation specifications and adds it as a parameter in the D3 graph API.

parses explicit and implicit SBOL for edge orientation
changed Edge orientation from String to Orientation object
- added new constant "undeclared" for implicit orientation
added new class for SBOLException handling
added orientation parameter to D3 graph object

dany-fu commented 5 years ago

@nroehner Latest commit adds INLINE and REVERSE edges if the orientation is not specified in the SBOL input. I did end up having to call addEdge().