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CINPLA / expipe-plugin-cinpla

Plugins for expipe command line interface
http://expipe-plugin-cinpla.readthedocs.io/en/latest/
GNU General Public License v3.0
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nwb conversion #65

Closed mariapfj closed 4 months ago

mariapfj commented 4 months ago

when running the conversion script, I keep having issues with some but not all recordings. In the latest attempt, there are 18 action folders in the old project path, of which 13 are completely ignored and 3 get the following error message: Source data is valid! Attaching probe Running conversion to NWB Metadata is valid! conversion_options is valid! Error processing action 002-140721-3. Removing it from new project: Error: column 'channel' already exists in TimeIntervals 'trials'

so in the end I'm left with 2 successful conversions, 3 failures, and a lot of ignored action folders?

in case you want to check them out its old_project_path = Path("/projects/ec109/maria/novel-env-exdir") new_project_path = Path("/projects/ec109/maria/novel-env-nwb")

alejoe91 commented 4 months ago

Can you give me access to "/projects/ec109/maria/novel-env-exdir"?

You can run: chgrp -R ec109-member-group /projects/ec109/maria/novel-env-exdir

This will give access to the entire group, but otherwise I'm not able to run it on my side. Is that ok?

alejoe91 commented 4 months ago

Testing now :)

alejoe91 commented 4 months ago

Ok, I was able to reproduce the issue.

In my case, though, 11 actions completed, and the other 7 failed for the issue you mentioned. Can you try to run it again on your side?

I'll fix the trial stuff on monday!

alejoe91 commented 4 months ago

Ok it was actually a quick fix and it's done on EduCloud!

Here's the output of the conversion of your project on my side: image

Only one action failed, and I suspect that the open ephys folder in the main.exdir has not been fully uploaded successfully.

Closing :)