CIRDLES / Tripoli

Tripoli imports raw mass spectrometer data files and supports interactive review and archiving of isotopic data. Tripoli facilitates visualization of temporal trends and scatter during measurement, statistically rigorous filtering of data, and calculation of statistical parameters.
http://cirdles.org/Tripoli/
Apache License 2.0
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naming #77

Closed noahmclean closed 1 year ago

noahmclean commented 1 year ago

From code walkthrough during PI meeting today:

Change accumulateDataPerSequenceTableSpecs to accumulateOnPeakDataPerSequenceTableSpecs Data is all data, some of which is OnPeak and some of which is Baseline.

axialFlags should be IonCounterFlags In mass spectrometry, "Axial" could describe the position of a detector in the mass spectrometer or the name of a detector that sometimes lives in the Axial position. IonCounter is more specific here.

Change name of DataSourceProcessor_OPPhoenix to DataSourceProcessor_PhoenixTextFile

In DataModelDriverExperiment, change applyInversionwithRJMCMC to applyInveresionWithAdaptiveMCMC. We aren't doing reversible jumps (rj) right now and maybe not ever, depending on how long it takes to run.

Also, change blStdArray to blStandardDeviationArray for clarity