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CK7 / abawaca

abawaca is a binning program for metagenomics
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Some troubles with abawaca #4

Open Eco-Luozhh opened 7 years ago

Eco-Luozhh commented 7 years ago

Hello, I'm a student in China. And recently I feel great interests in binning. So I have tried different binning methods. However, when I am trying the abawaca method. I have some troubles with it. First, my college has tried the old version of it and he told me the usage. But I am interested in the new version . But the usage is different. It told me to offer the sam-files-glob and source-sam-file. In my opinion, source-sam-file is the raw data mapping to the scaffold data and get the sam file. But I don't know the what sam-file-glob is . Could you please tell me?

Eco-Luozhh commented 7 years ago

Hello, When I run the abawaca-build, it didn't predict the scg successfully, the stderr said 'sh: /Users/ItaiSharon/dropbox/software/bin/scg.pl: No such file or directory'. So could you please help me to solve the problem? Thanks, Luozhh